RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PRAMEF5Q5TYX0 476 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 GDPGP1Q6ZNW5 385 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 SULT4A1Q9BR01 284 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 MS4A7Q9GZW8 240 aaPredicted RBP15.96■□□□□ 0.15
CLN3-225ENST00000566824 LIN7BQ9HAP6 207 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FBLN5Q9UBX5 448 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 DAPK2Q9UIK4 370 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 UBE2J1Q9Y385 318 aaPredicted RBP15.96■□□□□ 0.15
CLN3-225ENST00000566824 TRGV10A0A0A0MS01 117 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 PDCD6O75340 191 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 IGHV1-8P0DP01 117 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 OMGP23515 440 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 COX7A1P24310 79 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 NCS1P62166 190 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 PAX5Q02548 391 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 BLMHQ13867 455 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 SLC35E4Q6ICL7 350 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 SFXN4Q6P4A7 337 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 ZNF497Q6ZNH5 498 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 C9orf139Q6ZV77 190 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 C6orf201Q7Z4U5 140 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 C5orf24Q7Z6I8 188 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 FAM89BQ8N5H3 189 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 SIGLECL1Q8N7X8 197 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 MRGPRDQ8TDS7 321 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 NEK7Q8TDX7 302 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 CCDC107Q8WV48 283 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 C17orf50Q8WW18 174 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 BARHL1Q9BZE3 327 aa15.95■□□□□ 0.14
CLN3-225ENST00000566824 A0A0U1RQK1 487 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 A0A1W2PPH5 198 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 FUOMA2VDF0 154 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 MCRIP1C9JLW8 97 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 VENTXO95231 258 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 PAHP00439 452 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 MT-ND4P03905 459 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 SNRPBP14678 240 aaKnown RBP15.94■□□□□ 0.14
CLN3-225ENST00000566824 RPS19P39019 145 aaKnown RBP15.94■□□□□ 0.14
CLN3-225ENST00000566824 GLP1RP43220 463 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 KCNJ3P48549 501 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 TMEM50BP56557 158 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 DEFB112Q30KQ8 113 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 MOGAT2Q3SYC2 334 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 TIMM50Q3ZCQ8 353 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 UBALD1Q8TB05 177 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 AJUBAQ96IF1 538 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 FAAP24Q9BTP7 215 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 SPACA1Q9HBV2 294 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 ESM1Q9NQ30 184 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 ETAA1Q9NY74 926 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 FBN1P35555 2871 aaKnown RBP15.94■□□□□ 0.14
CLN3-225ENST00000566824 TMEM30CPA0ZSE6 113 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 BLVRBP30043 206 aaPredicted RBP15.94■□□□□ 0.14
CLN3-225ENST00000566824 VEGFCP49767 419 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 UBE2E1P51965 193 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 VBP1P61758 197 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 GPR107Q5VW38 600 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 Q6ZPA2 131 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 OR4K15Q8NH41 348 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 NCOR1P1Q9H4R4 102 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 TAS2R3Q9NYW6 316 aa15.94■□□□□ 0.14
CLN3-225ENST00000566824 FAM172BPA6NC97 362 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 NPFFO15130 113 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 CLPXO76031 633 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 RBP4P02753 201 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 CDK2P24941 298 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 FPR2P25090 351 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 PAX6P26367 422 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 SSTR5P35346 364 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 PLAC9Q5JTB6 97 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 OLFML2AQ68BL7 652 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 NCR3LG1Q68D85 454 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 FAM53AQ6NSI3 398 aaPredicted RBP15.93■□□□□ 0.14
CLN3-225ENST00000566824 GAPTQ8N292 157 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 OR5H6Q8NGV6 325 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 RFESDQ8TAC1 157 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 NEDD4LQ96PU5 975 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 SUCNR1Q9BXA5 334 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 CALYQ9NYX4 217 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 OR6C3Q9NZP0 311 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 RAB22AQ9UL26 194 aa15.93■□□□□ 0.14
CLN3-225ENST00000566824 KBTBD11-OT1A0A1B0GTJ5 212 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 ZNF729A6NN14 1252 aaPredicted RBP15.92■□□□□ 0.14
CLN3-225ENST00000566824 SAA4P35542 130 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 RBM39Q14498 530 aaKnown RBP15.92■□□□□ 0.14
CLN3-225ENST00000566824 CTF1Q16619 201 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 LDLRAD2Q5SZI1 272 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 HEPN1Q6WQI6 88 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 ANKRD13BQ86YJ7 626 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 LGALS14Q8TCE9 139 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 ARHGAP5-AS1Q96IT6 56 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 HDHD3Q9BSH5 251 aaPredicted RBP15.92■□□□□ 0.14
CLN3-225ENST00000566824 URM1Q9BTM9 101 aaKnown RBP15.92■□□□□ 0.14
CLN3-225ENST00000566824 SESN1Q9Y6P5 492 aa15.92■□□□□ 0.14
CLN3-225ENST00000566824 hCG_1809904A0A1W2PP81 198 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 A0A1W2PPE2 198 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 A0A1W2PR64 198 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 A0A1W2PRV1 198 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 C15orf65H3BRN8 121 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 IFNA2P01563 188 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms