RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OR2AE1Q8NHA4 323 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 HPSE2Q8WWQ2 592 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 MOB3AQ96BX8 217 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 NTNG2Q96CW9 530 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF286AQ9HBT8 521 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 A0A0G2JMM0 328 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 A0A1W2PPB8 328 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 A0A1W2PRS3 328 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 KIR3DP1A8MWS1 328 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 SYNGR3O43761 229 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF205O95201 554 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 NHLH2Q02577 135 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 GAGE1Q13065 139 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 GNMTQ14749 295 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 RIPPLY2Q5TAB7 128 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 RAET1LQ5VY80 246 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 OSR2Q8N2R0 312 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 OR5L1Q8NGL2 311 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 ISOC2Q96AB3 205 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 FAM122AQ96E09 287 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 MARS2Q96GW9 593 aaKnown RBP11.41□□□□□ -0.58
VPS4A-204ENST00000566354 GNRHR2Q96P88 292 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF581Q9P0T4 197 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 ZDHHC8Q9ULC8 765 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 WASF3Q9UPY6 502 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 URB1O60287 2271 aaKnown RBP11.41□□□□□ -0.58
VPS4A-204ENST00000566354 A0A1W2PPH5 198 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 A6NLC8 198 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 GEMIN2O14893 280 aaKnown RBP11.41□□□□□ -0.58
VPS4A-204ENST00000566354 CYB561P49447 251 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 RAB1AP62820 205 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 ABHD17BQ5VST6 288 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 SPINK14Q6IE38 97 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 HSD17B11Q8NBQ5 300 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 OR10J5Q8NHC4 309 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF837Q96EG3 531 aaPredicted RBP11.41□□□□□ -0.58
VPS4A-204ENST00000566354 MALSU1Q96EH3 234 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 SGCZQ96LD1 299 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 C20orf24Q9BUV8 137 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 SH3BGRL3Q9H299 93 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 PLA2G3Q9NZ20 509 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 IL36GQ9NZH8 169 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF391Q9UJN7 358 aa11.41□□□□□ -0.58
VPS4A-204ENST00000566354 PRRC2CQ9Y520 2896 aaKnown RBP11.4□□□□□ -0.58
VPS4A-204ENST00000566354 ITGB1BP1O14713 200 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 PHF1O43189 567 aaPredicted RBP11.4□□□□□ -0.58
VPS4A-204ENST00000566354 ZIC3O60481 467 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 C1QL1O75973 258 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 NRASP01111 189 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 LCATP04180 440 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 GNG10P50151 68 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 SULT1A1P50225 295 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 NUTF2P61970 127 aaKnown RBP11.4□□□□□ -0.58
VPS4A-204ENST00000566354 FABP9Q0Z7S8 132 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 TMEM42Q69YG0 159 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 RBMS3Q6XE24 437 aaKnown RBP11.4□□□□□ -0.58
VPS4A-204ENST00000566354 FBXL14Q8N1E6 418 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 GPR137CQ8N3F9 429 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 OR4D5Q8NGN0 318 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 OR1F12Q8NHA8 337 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 JSRP1Q96MG2 331 aaPredicted RBP11.4□□□□□ -0.58
VPS4A-204ENST00000566354 RSRP1Q9BUV0 290 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 LRFN1Q9P244 771 aa11.4□□□□□ -0.58
VPS4A-204ENST00000566354 RCL1Q9Y2P8 373 aaKnown RBP11.4□□□□□ -0.58
VPS4A-204ENST00000566354 CDS2O95674 445 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 CST2P09228 141 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 GLI4P10075 376 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 DAOP14920 347 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 RAB2AP61019 212 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 HERV-K104P61576 105 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 SRPXP78539 464 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 OR8B8Q15620 311 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 PIGYQ3MUY2 71 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 FAM24BQ8N5W8 94 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 CD300LFQ8TDQ1 290 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 SIGLEC12Q96PQ1 595 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 SF3B5Q9BWJ5 86 aaKnown RBP11.4□□□□□ -0.59
VPS4A-204ENST00000566354 ST3GAL6Q9Y274 331 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 FBXO7Q9Y3I1 522 aa11.4□□□□□ -0.59
VPS4A-204ENST00000566354 ANKRD11Q6UB99 2663 aaPredicted RBP11.39□□□□□ -0.59
VPS4A-204ENST00000566354 BOD1L1Q8NFC6 3051 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 K7N7A8 449 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 KLK10O43240 276 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 PDCD6O75340 191 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 NEURL1O76050 574 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 IGHV2-5P01817 119 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 MAS1LP35410 378 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 EWSR1Q01844 656 aaKnown RBP eCLIP11.39□□□□□ -0.59
VPS4A-204ENST00000566354 MALLQ13021 153 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF266Q14584 549 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 CLINT1Q14677 625 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 TMEM211Q6ICI0 200 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF774Q6NX45 483 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 BRICD5Q6PL45 260 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.39□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF100Q8IYN0 542 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 OR11L1Q8NGX0 322 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 DYRK2Q92630 601 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 RAB24Q969Q5 203 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 BOD1Q96IK1 185 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms