RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 UTF1Q5T230 341 aa14.88□□□□□ -0.03
CLN3-218ENST00000565688 RSBN1Q5VWQ0 802 aaPredicted RBP14.88□□□□□ -0.03
CLN3-218ENST00000565688 ASCL4Q6XD76 172 aa14.88□□□□□ -0.03
CLN3-218ENST00000565688 GPR148Q8TDV2 347 aa14.88□□□□□ -0.03
CLN3-218ENST00000565688 JAM3Q9BX67 310 aa14.88□□□□□ -0.03
CLN3-218ENST00000565688 FAM192AQ9GZU8 254 aa14.88□□□□□ -0.03
CLN3-218ENST00000565688 PSG11Q9UQ72 335 aa14.88□□□□□ -0.03
CLN3-218ENST00000565688 LOC100130705A0A1B0GUX0 176 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 PSMB11A5LHX3 300 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 SH2D7A6NKC9 451 aaPredicted RBP14.87□□□□□ -0.03
CLN3-218ENST00000565688 SNRNP70P08621 437 aaKnown RBP14.87□□□□□ -0.03
CLN3-218ENST00000565688 SOX2P48431 317 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 PIGYQ3MUY2 71 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 OR8H3Q8N146 312 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 OR51A2Q8NGJ7 313 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 OR56B4Q8NH76 319 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 MRGPRDQ8TDS7 321 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 IFT22Q9H7X7 185 aa14.87□□□□□ -0.03
CLN3-218ENST00000565688 A0A1W2PPI3 338 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 FGF16O43320 207 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 HTR3BO95264 441 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 LIMS3P0CW19 117 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 LIMS4P0CW20 117 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 HES1Q14469 280 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 NHLRC3Q5JS37 347 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 RPL22L1Q6P5R6 122 aaKnown RBP14.86□□□□□ -0.03
CLN3-218ENST00000565688 C10orf99Q6UWK7 81 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 DRAM1Q8N682 238 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 OR51D1Q8NGF3 324 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 OR10K1Q8NGX5 313 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 OR10X1Q8NGY0 326 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 CHPT1Q8WUD6 406 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 LEAP2Q969E1 77 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 DPCDQ9BVM2 203 aaPredicted RBP14.86□□□□□ -0.03
CLN3-218ENST00000565688 GPR61Q9BZJ8 451 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 FGF20Q9NP95 211 aaPredicted RBP14.86□□□□□ -0.03
CLN3-218ENST00000565688 TMEM138Q9NPI0 162 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 FAM118AQ9NWS6 357 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 PAK1IP1Q9NWT1 392 aaPredicted RBP14.86□□□□□ -0.03
CLN3-218ENST00000565688 TAS2R4Q9NYW5 299 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 IL36GQ9NZH8 169 aa14.86□□□□□ -0.03
CLN3-218ENST00000565688 MPIG6BO95866 241 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 IGHV3-7P01780 117 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 TMEM11P17152 192 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 GZMHP20718 246 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 GTF2A1P52655 376 aaPredicted RBP14.85□□□□□ -0.03
CLN3-218ENST00000565688 PPP3R1P63098 170 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 LTC4SQ16873 150 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 TMPRSS11AQ6ZMR5 421 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 LINC00596Q86U02 117 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 C5orf56Q8N8D9 126 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 SUMF2Q8NBJ7 301 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 RFESDQ8TAC1 157 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 PLPPR1Q8TBJ4 325 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 RGP1Q92546 391 aaPredicted RBP14.85□□□□□ -0.03
CLN3-218ENST00000565688 TMEM106AQ96A25 262 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 SLC29A1Q99808 456 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 METTL9Q9H1A3 318 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 ST3GAL6Q9Y274 331 aa14.85□□□□□ -0.03
CLN3-218ENST00000565688 CSTBP04080 98 aaKnown RBP14.84□□□□□ -0.03
CLN3-218ENST00000565688 SLC6A1P30531 599 aa14.84□□□□□ -0.03
CLN3-218ENST00000565688 SSTR5P35346 364 aa14.84□□□□□ -0.03
CLN3-218ENST00000565688 GNG10P50151 68 aa14.84□□□□□ -0.03
CLN3-218ENST00000565688 RBM11P57052 281 aaKnown RBP14.84□□□□□ -0.03
CLN3-218ENST00000565688 OR52N1Q8NH53 320 aa14.84□□□□□ -0.03
CLN3-218ENST00000565688 APH1BQ8WW43 257 aa14.84□□□□□ -0.03
CLN3-218ENST00000565688 S100A13Q99584 98 aa14.84□□□□□ -0.03
CLN3-218ENST00000565688 ING4Q9UNL4 249 aa14.84□□□□□ -0.03
CLN3-218ENST00000565688 COL7A1Q02388 2944 aa14.84□□□□□ -0.03
CLN3-218ENST00000565688 TMEM30CPA0ZSE6 113 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 IRGMA1A4Y4 181 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 SERPINE3A8MV23 424 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 ZNF780AO75290 641 aaPredicted RBP14.83□□□□□ -0.04
CLN3-218ENST00000565688 OR7C1O76099 320 aaPredicted RBP14.83□□□□□ -0.04
CLN3-218ENST00000565688 CDRT1O95170 752 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 DCKP27707 260 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 ZNF93P35789 620 aaPredicted RBP14.83□□□□□ -0.04
CLN3-218ENST00000565688 DDI2Q5TDH0 399 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 ZNF329Q86UD4 541 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 COMMD1Q8N668 190 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 LINC00482Q8N8I6 264 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 DPF1Q92782 380 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 S100A14Q9HCY8 104 aa14.83□□□□□ -0.04
CLN3-218ENST00000565688 HSD17B6O14756 317 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 IGKV1D-33P01593 117 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 IGKV1-33P01594 117 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 GAPDHP04406 335 aaKnown RBP14.82□□□□□ -0.04
CLN3-218ENST00000565688 BDKRB2P30411 391 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 ETV1P50549 477 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 RPL23AP62750 156 aaKnown RBP14.82□□□□□ -0.04
CLN3-218ENST00000565688 SLC35B1P78383 322 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 ZNF816Q0VGE8 651 aaPredicted RBP14.82□□□□□ -0.04
CLN3-218ENST00000565688 DIAPH2-AS1Q14236 149 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 HNF4GQ14541 408 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 MPV17LQ2QL34 196 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 XAF1Q6GPH4 301 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 PQLC1Q8N2U9 271 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 C8orf31Q8N9H6 132 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 ZNF555Q8NEP9 628 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 OR52M1Q8NGK5 317 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms