RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 FGF16O43320 207 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 CLIC3O95833 236 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 RAB7AP51149 207 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 GBX2P52951 348 aaPredicted RBP13.56□□□□□ -0.24
CLN3-216ENST00000565316 MADCAM1Q13477 382 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 LPCAT4Q643R3 524 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 ETV3LQ6ZN32 361 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 C5orf56Q8N8D9 126 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 OR51A2Q8NGJ7 313 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 OR52I1Q8NGK6 324 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 OR56B4Q8NH76 319 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 PLPPR1Q8TBJ4 325 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 TNFAIP8L1Q8WVP5 186 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 TSEN15Q8WW01 171 aaKnown RBP13.56□□□□□ -0.24
CLN3-216ENST00000565316 RGP1Q92546 391 aaPredicted RBP13.56□□□□□ -0.24
CLN3-216ENST00000565316 LEAP2Q969E1 77 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 IFT22Q9H7X7 185 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 IGHV3-7P01780 117 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 DIAPH2-AS1Q14236 149 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 RSU1Q15404 277 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 PIGYQ3MUY2 71 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 NHLRC3Q5JS37 347 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 KHDC1LQ5JSQ8 128 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 MRPL41Q8IXM3 137 aaKnown RBP13.55□□□□□ -0.24
CLN3-216ENST00000565316 OR8H3Q8N146 312 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 RFESDQ8TAC1 157 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 MRGPRDQ8TDS7 321 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 CHPT1Q8WUD6 406 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 JAM3Q9BX67 310 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 IL36GQ9NZH8 169 aa13.55□□□□□ -0.24
CLN3-216ENST00000565316 WI2-2373I1.2A0A1W2PRP0 233 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 MAGEB3O15480 346 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 LIMS3P0CW19 117 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 LIMS4P0CW20 117 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 GTF2A1P52655 376 aaPredicted RBP13.54□□□□□ -0.24
CLN3-216ENST00000565316 RPL23AP62750 156 aaKnown RBP13.54□□□□□ -0.24
CLN3-216ENST00000565316 EBI3Q14213 229 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 ZNF329Q86UD4 541 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 SATL1Q86VE3 508 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 OR10K1Q8NGX5 313 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 GPER1Q99527 375 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 SLC29A1Q99808 456 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 DPCDQ9BVM2 203 aaPredicted RBP13.54□□□□□ -0.24
CLN3-216ENST00000565316 TAS2R4Q9NYW5 299 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 ZNF581Q9P0T4 197 aa13.54□□□□□ -0.24
CLN3-216ENST00000565316 RPL36Q9Y3U8 105 aaKnown RBP13.54□□□□□ -0.24
CLN3-216ENST00000565316 LOC100130705A0A1B0GUX0 176 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 IGHG2P01859 326 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 TMEM11P17152 192 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 SLC6A1P30531 599 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 SSTR5P35346 364 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 SOX2P48431 317 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 CCDC58Q4VC31 144 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 KLHL22Q53GT1 634 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 RPL22L1Q6P5R6 122 aaKnown RBP13.53□□□□□ -0.24
CLN3-216ENST00000565316 OR2W3Q7Z3T1 314 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 SUMF2Q8NBJ7 301 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 GPR148Q8TDV2 347 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 APH1BQ8WW43 257 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 NOL4LQ96MY1 436 aaPredicted RBP13.53□□□□□ -0.24
CLN3-216ENST00000565316 C9orf16Q9BUW7 83 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 GPR61Q9BZJ8 451 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 FGF20Q9NP95 211 aaPredicted RBP13.53□□□□□ -0.24
CLN3-216ENST00000565316 ST3GAL6Q9Y274 331 aa13.53□□□□□ -0.24
CLN3-216ENST00000565316 TRAV39A0A0B4J263 110 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 HTR3BO95264 441 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 GZMHP20718 246 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 THBS3P49746 956 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 ZNF816Q0VGE8 651 aaPredicted RBP13.52□□□□□ -0.25
CLN3-216ENST00000565316 HES1Q14469 280 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 HNF4GQ14541 408 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 VAX1Q5SQQ9 334 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 C8orf31Q8N9H6 132 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 OR51D1Q8NGF3 324 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 OR10X1Q8NGY0 326 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 ZFP57Q9NU63 452 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 FAM118AQ9NWS6 357 aa13.52□□□□□ -0.25
CLN3-216ENST00000565316 SERPINE3A8MV23 424 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 C15orf65H3BRN8 121 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 CDRT1O95170 752 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 IGKV1D-33P01593 117 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 IGKV1-33P01594 117 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 CD2P06729 351 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 GNG10P50151 68 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 RBM11P57052 281 aaKnown RBP13.51□□□□□ -0.25
CLN3-216ENST00000565316 LTC4SQ16873 150 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 XAF1Q6GPH4 301 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 LINC00596Q86U02 117 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 C10orf67Q8IYJ2 551 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 LINC00311Q8N616 119 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 COMMD1Q8N668 190 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 Q8N6K4 173 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 OR52M1Q8NGK5 317 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 OR52N1Q8NH53 320 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 TMEM106AQ96A25 262 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 FAM192AQ9GZU8 254 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 METTL9Q9H1A3 318 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 TMEM138Q9NPI0 162 aa13.51□□□□□ -0.25
CLN3-216ENST00000565316 IGHV1-3A0A0C4DH29 117 aa13.5□□□□□ -0.25
CLN3-216ENST00000565316 A0A1W2PPE3 182 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms