RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 DUSP3P51452 185 aaPredicted RBP11.57□□□□□ -0.56
CLK3-215ENST00000564353 GUK1Q16774 197 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 RTL6Q6ICC9 239 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 DIDO1Q9BTC0 2240 aaKnown RBP11.56□□□□□ -0.56
CLK3-215ENST00000564353 A0A1W2PNU3 283 aaPredicted RBP11.56□□□□□ -0.56
CLK3-215ENST00000564353 IGSF23A1L1A6 192 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 CYTIPO60759 359 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 NEURL1O76050 574 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 IFNA4P05014 189 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 CD5P06127 495 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 ZNF44P15621 663 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 RAB1AP62820 205 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 EIF5AP63241 154 aaKnown RBP11.56□□□□□ -0.56
CLK3-215ENST00000564353 OR8B8Q15620 311 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 AWAT1Q58HT5 328 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 C10orf91Q5T1B1 145 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 Q6ZSR3 168 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 WDR5BQ86VZ2 330 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 CPNE4Q96A23 557 aaPredicted RBP11.56□□□□□ -0.56
CLK3-215ENST00000564353 FAM212BQ9NTI7 297 aaPredicted RBP11.56□□□□□ -0.56
CLK3-215ENST00000564353 PRR14LQ5THK1 2151 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 hCG_1809904A0A1W2PP81 198 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 A0A1W2PR64 198 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 A0A1W2PRV1 198 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 A6NLC8 198 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 RHBDL1O75783 438 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 PCBD1P61457 104 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 EWSR1Q01844 656 aaKnown RBP eCLIP11.56□□□□□ -0.56
CLK3-215ENST00000564353 PLGLB1Q02325 96 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 TLE1Q04724 770 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 NUFIP2Q7Z417 695 aaKnown RBP11.56□□□□□ -0.56
CLK3-215ENST00000564353 C1orf210Q8IVY1 113 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 OR2M7Q8NG81 312 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 SYT3Q9BQG1 590 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 RSRP1Q9BUV0 290 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 PARP11Q9NR21 331 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 C19orf12Q9NSK7 152 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 DECR2Q9NUI1 292 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 CACFD1Q9UGQ2 172 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 PRSS50Q9UI38 385 aa11.56□□□□□ -0.56
CLK3-215ENST00000564353 IGKV1-6A0A0C4DH72 117 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 C9orf172C9J069 976 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 DVL1P1P54792 670 aaPredicted RBP11.55□□□□□ -0.56
CLK3-215ENST00000564353 GNMTQ14749 295 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 OR2T2Q6IF00 324 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 DPPA2Q7Z7J5 298 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 TMEM171Q8WVE6 324 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 DEFB127Q9H1M4 99 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 RGCCQ9H4X1 137 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 IL17BQ9UHF5 180 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 PUS1Q9Y606 427 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLK3-215ENST00000564353 DMXL1Q9Y485 3027 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 A0A1W2PPH5 198 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 ZNF729A6NN14 1252 aaPredicted RBP11.55□□□□□ -0.56
CLK3-215ENST00000564353 FAM157AC9JC47 383 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 H7C1Q1 480 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 GPR137BO60478 399 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 TMEM50AO95807 157 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 ZNF16P17020 682 aaPredicted RBP11.55□□□□□ -0.56
CLK3-215ENST00000564353 SNCAP37840 140 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 ECI1P42126 302 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 OR1C1Q15619 314 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 AVPI1Q5T686 147 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 ABHD17BQ5VST6 288 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 UBAC2Q8NBM4 344 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 GALNT14Q96FL9 552 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 MEGF10Q96KG7 1140 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 SSX3Q99909 188 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 BORCS7-ASMTA0A0B4J1R7 106 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 A0A1W2PPE2 198 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 CA11O75493 328 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 SERPINA7P05543 415 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 CA6P23280 308 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 LHX2P50458 406 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 OR2B8PP59922 312 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 HAGHQ16775 308 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 SUCNR1Q9BXA5 334 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 C1QTNF5Q9BXJ0 243 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 PLEKHA2Q9HB19 425 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 LIPGQ9Y5X9 500 aa11.55□□□□□ -0.56
CLK3-215ENST00000564353 KIAA2026Q5HYC2 2103 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 A0A1W2PPE3 182 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 COLCA2A8K830 154 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 ZNF724A8MTY0 619 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 TFF1P04155 84 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 TK1P04183 234 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 HOXA6P31267 233 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 NKX2-1P43699 371 aaPredicted RBP11.54□□□□□ -0.56
CLK3-215ENST00000564353 ZNF154Q13106 437 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 TRA2AQ13595 282 aaKnown RBP eCLIP11.54□□□□□ -0.56
CLK3-215ENST00000564353 SSPNQ14714 243 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 MAJINQ3KP22 176 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 ASCL4Q6XD76 172 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 OR5C1Q8NGR4 320 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 OR2G3Q8NGZ4 309 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 LURAP1Q96LR2 239 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 TTTY12Q9BZ98 90 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 GLRX2Q9NS18 164 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 SLC22A20A6NK97 555 aa11.54□□□□□ -0.56
CLK3-215ENST00000564353 DANCRP0C864 163 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms