RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SLC25A30Q5SVS4 291 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 RSBN1Q5VWQ0 802 aaPredicted RBP13.3□□□□□ -0.28
CLN3-211ENST00000564091 SLC35E3Q7Z769 313 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 SERPINA12Q8IW75 414 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 HAVCR2Q8TDQ0 301 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 WWC2-AS2Q96NR7 200 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 P2RX4Q99571 388 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 MCRIP2Q9BUT9 160 aaKnown RBP13.3□□□□□ -0.28
CLN3-211ENST00000564091 LINC00574Q9H8X3 128 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 ZNF581Q9P0T4 197 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 IGHV3-72A0A0B4J1Y9 119 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 IGHG2P01859 326 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 REG1BP48304 166 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 RAB7AP51149 207 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 PIGYQ3MUY2 71 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 MEDAGQ5VYS4 303 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 ELP2Q6IA86 826 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 SATL1Q86VE3 508 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 OR8H3Q8N146 312 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 PARP16Q8N5Y8 322 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 PXT1Q8NFP0 134 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 OR51A2Q8NGJ7 313 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 OR10X1Q8NGY0 326 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 TNFAIP8L1Q8WVP5 186 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 TFAP2CQ92754 450 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 PDCD1LG2Q9BQ51 273 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 ALG8Q9BVK2 526 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 NCOR1P1Q9H4R4 102 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 DHDHQ9UQ10 334 aa13.29□□□□□ -0.28
CLN3-211ENST00000564091 GABRPO00591 440 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 ALPLP05186 524 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 RAB25P57735 213 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 SLC35B1P78383 322 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 GALEQ14376 348 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 UNQ9370/PRO34162Q6UXP9 181 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 LCNL1Q6ZST4 164 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 MOB3BQ86TA1 216 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 ZNF695Q8IW36 515 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 STPG2Q8N412 459 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 TSEN15Q8WW01 171 aaKnown RBP13.28□□□□□ -0.28
CLN3-211ENST00000564091 RAX2Q96IS3 184 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 GPER1Q99527 375 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 AMBNQ9NP70 447 aa13.28□□□□□ -0.28
CLN3-211ENST00000564091 NCBP2LA6PVI3 153 aaKnown RBP13.27□□□□□ -0.29
CLN3-211ENST00000564091 H0YHG0 523 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 EI24O14681 340 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 HSD17B6O14756 317 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 RAB3AP20336 220 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 SLC6A1P30531 599 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 DGCR2P98153 550 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 IL13RA2Q14627 380 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 FAM53AQ6NSI3 398 aaPredicted RBP13.27□□□□□ -0.29
CLN3-211ENST00000564091 FOXRED2Q8IWF2 684 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 SYS1Q8N2H4 156 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 COMMD1Q8N668 190 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 OR5AK2Q8NH90 309 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 UBALD1Q8TB05 177 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 PYDC1Q8WXC3 89 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 DPCDQ9BVM2 203 aaPredicted RBP13.27□□□□□ -0.29
CLN3-211ENST00000564091 FAM192AQ9GZU8 254 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 ORC6Q9Y5N6 252 aa13.27□□□□□ -0.29
CLN3-211ENST00000564091 TMEM212A6NML5 194 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 SNTNA6NMZ2 147 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 CCL24O00175 119 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 CCRL2O00421 344 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 CDRT1O95170 752 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 HTR3BO95264 441 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 RPLP1P05386 114 aaKnown RBP13.26□□□□□ -0.29
CLN3-211ENST00000564091 SOX2P48431 317 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 RASSF2P50749 326 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 RSU1Q15404 277 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 DEFB136Q30KP8 78 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 SLC16A12Q6ZSM3 486 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 HUWE1Q7Z6Z7 4374 aaKnown RBP13.26□□□□□ -0.29
CLN3-211ENST00000564091 SUMF2Q8NBJ7 301 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 OR10A7Q8NGE5 316 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 RBMXL1Q96E39 390 aaKnown RBP13.26□□□□□ -0.29
CLN3-211ENST00000564091 MRPL48Q96GC5 212 aaKnown RBP13.26□□□□□ -0.29
CLN3-211ENST00000564091 EAF1Q96JC9 268 aaPredicted RBP13.26□□□□□ -0.29
CLN3-211ENST00000564091 DCLRE1BQ9H816 532 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 TAS2R4Q9NYW5 299 aa13.26□□□□□ -0.29
CLN3-211ENST00000564091 IGHV1-3A0A0C4DH29 117 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 MAGEB3O15480 346 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 GAPDHP04406 335 aaKnown RBP13.25□□□□□ -0.29
CLN3-211ENST00000564091 GABRB1P18505 474 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 GPR12P47775 334 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 KCNJ3P48549 501 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 LUMP51884 338 aaPredicted RBP13.25□□□□□ -0.29
CLN3-211ENST00000564091 GTF2A1P52655 376 aaPredicted RBP13.25□□□□□ -0.29
CLN3-211ENST00000564091 PAX5Q02548 391 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 ZNF816Q0VGE8 651 aaPredicted RBP13.25□□□□□ -0.29
CLN3-211ENST00000564091 EBI3Q14213 229 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 PNLIPRP3Q17RR3 467 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 ZNF529Q6P280 563 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 TEX38Q6PEX7 206 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 Q8NFD4 153 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 ERVK13-1Q9NX77 482 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 ING4Q9UNL4 249 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 ST3GAL6Q9Y274 331 aa13.25□□□□□ -0.29
CLN3-211ENST00000564091 AP4M1O00189 453 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms