RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 PITPNC1Q9UKF7 332 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 LEUTXA8MZ59 168 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 M0QZ24 198 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 ZNF780AO75290 641 aaPredicted RBP12.6□□□□□ -0.39
VPS39-203ENST00000561797 IGLV1-47P01700 117 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 GTF2F2P13984 249 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 CD24P25063 80 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 MAPK3P27361 379 aaPredicted RBP12.6□□□□□ -0.39
VPS39-203ENST00000561797 KCNJ3P48549 501 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 DYNLT3P51808 116 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 EFNB2P52799 333 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 GPR176Q14439 515 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 HABP2Q14520 560 aaPredicted RBP12.6□□□□□ -0.39
VPS39-203ENST00000561797 INSL4Q14641 139 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 MED22Q15528 200 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 MPV17LQ2QL34 196 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 AWAT2Q6E213 333 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 NEK7Q8TDX7 302 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 LEAP2Q969E1 77 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 TMED9Q9BVK6 235 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 CDCA4Q9BXL8 241 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 NCOR1P1Q9H4R4 102 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 IFT22Q9H7X7 185 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 IDI2-AS1Q9NZ38 188 aa12.6□□□□□ -0.39
VPS39-203ENST00000561797 BUB1B-PAK6H3BSN5 160 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 VSIG10L2P0DP72 767 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 MYF6P23409 242 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 SPHARQ15513 63 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 HLA-DRB5Q30154 266 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 ACSM3Q53FZ2 586 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 RNLSQ5VYX0 342 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 HIST2H2BDQ6DRA6 164 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 LINC00596Q86U02 117 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 KLHDC1Q8N7A1 406 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 C11orf44Q8N8P7 122 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 BANF2Q9H503 90 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 ZNF702PQ9H963 129 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 LSM2Q9Y333 95 aaKnown RBP12.59□□□□□ -0.39
VPS39-203ENST00000561797 TPRKBQ9Y3C4 175 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 PKD1L1Q8TDX9 2849 aa12.59□□□□□ -0.39
VPS39-203ENST00000561797 A0A087X0M5 115 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 A0A1B0GX30 115 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 IL1AP01583 271 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 BRS3P32247 399 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 SSTR5P35346 364 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 CEACAM3P40198 252 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 SLC35A2P78381 396 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 HERPUD1Q15011 391 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 ARSJQ5FYB0 599 aaPredicted RBP12.58□□□□□ -0.4
VPS39-203ENST00000561797 TPTE2P1Q5T6R2 138 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 FAM27D1Q5T7N8 215 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 Q6ZTK2 550 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 CDH26Q8IXH8 852 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 MS4A15Q8N5U1 240 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 DTX3Q8N9I9 347 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 OR9G1Q8NH87 305 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 CCDC107Q8WV48 283 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 THRSPQ92748 146 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 PRSS22Q9GZN4 317 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 VCX3BQ9H321 246 aa12.58□□□□□ -0.4
VPS39-203ENST00000561797 TMEM30CPA0ZSE6 113 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 FAM90A22PA8MWA6 464 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 NPIPB11E5RHQ5 1161 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 H0YHG0 523 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 H3BUI4 141 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 J3QR06 171 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 CRTAPO75718 401 aaPredicted RBP12.57□□□□□ -0.4
VPS39-203ENST00000561797 VHLP40337 213 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 GNG10P50151 68 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 ARHGDIBP52566 201 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 BLCAPP62952 87 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 PAX5Q02548 391 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 IRF3Q14653 427 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 RBM48Q5RL73 367 aaKnown RBP12.57□□□□□ -0.4
VPS39-203ENST00000561797 C11orf88Q6PI97 169 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 UNQ9370/PRO34162Q6UXP9 181 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 IZUMO2Q6UXV1 221 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 NKAIN3Q8N8D7 197 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 UBALD1Q8TB05 177 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 CREB3L1Q96BA8 519 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 ANKRD60Q9BZ19 345 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 SELENOIQ9C0D9 397 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 CCDC90BQ9GZT6 254 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 MMP28Q9H239 520 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 PSG11Q9UQ72 335 aa12.57□□□□□ -0.4
VPS39-203ENST00000561797 A0A1W2PPE3 182 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 MCRIP1C9JLW8 97 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 LY6LH3BQJ8 138 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 RGS10O43665 173 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 TSPAN15O95858 294 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 HSMCR30P0CW71 290 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 MGMTP16455 207 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 GZMHP20718 246 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 GP2P55259 537 aaKnown RBP12.56□□□□□ -0.4
VPS39-203ENST00000561797 LIPKQ5VXJ0 399 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 Q6ZS46 218 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 CEACAM19Q7Z692 300 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 LYPD6Q86Y78 171 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 TMEM104Q8NE00 496 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 ARL11Q969Q4 196 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms