RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 HAX1O00165 279 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 NPFFO15130 113 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 UPK1BO75841 260 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 RBP4P02753 201 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 CSTBP04080 98 aaKnown RBP7.65□□□□□ -1.18
LDLR-211ENST00000560173 ZNF728P0DKX0 622 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 CD37P11049 281 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 GTF2F2P13984 249 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 SRMP19623 302 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 TNFSF8P32971 234 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 UBE2E1P51965 193 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 UBA52P62987 128 aaKnown RBP7.65□□□□□ -1.18
LDLR-211ENST00000560173 GUCA2AQ02747 115 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 GPR176Q14439 515 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 ATXN7L3Q14CW9 347 aaPredicted RBP7.65□□□□□ -1.18
LDLR-211ENST00000560173 PAN3Q58A45 887 aaKnown RBP7.65□□□□□ -1.18
LDLR-211ENST00000560173 AWAT2Q6E213 333 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 BAIAP2L2Q6UXY1 529 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 RBMS3Q6XE24 437 aaKnown RBP7.65□□□□□ -1.18
LDLR-211ENST00000560173 LINC00596Q86U02 117 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 PNKDQ8N490 385 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 C15orf40Q8WUR7 153 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 COQ2Q96H96 371 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 DIRAS2Q96HU8 199 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 ZNF714Q96N38 554 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 IFT22Q9H7X7 185 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 PCDHB16Q9NRJ7 776 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 ST3GAL6Q9Y274 331 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 LINC00312Q9Y6C7 94 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 hCG_1809904A0A1W2PP81 198 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 A0A1W2PPE2 198 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 A0A1W2PR64 198 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 A0A1W2PRD5 423 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 A0A1W2PRF3 423 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 A0A1W2PRM7 423 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 A0A1W2PRV1 198 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 ODAMA1E959 279 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 FUOMA2VDF0 154 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 FABP12A6NFH5 140 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 CLDN34H7C241 214 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 J3QRK9 145 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 HSPB6O14558 160 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 CTDSP2O14595 271 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 GEMIN2O14893 280 aaKnown RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 OR7C1O76099 320 aaPredicted RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 TPPPO94811 219 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 APOA1P02647 267 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 GLIPR1P48060 266 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 ERVFRD-1P60508 538 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 PAX5Q02548 391 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 AESQ08117 197 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 BAMBIQ13145 260 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 MPV17LQ2QL34 196 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 TRIM16LQ309B1 348 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 C1orf100Q5SVJ3 147 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 IDNKQ5T6J7 187 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 GLT8D1Q68CQ7 371 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 SFXN4Q6P4A7 337 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 ZNF782Q6ZMW2 699 aaPredicted RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 TMEM104Q8NE00 496 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 SETD6Q8TBK2 473 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 CHPT1Q8WUD6 406 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 FOXRED1Q96CU9 486 aaPredicted RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 MRPS24Q96EL2 167 aaKnown RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 GFI1Q99684 422 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 DPCDQ9BVM2 203 aaPredicted RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 C19orf24Q9BVV8 132 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 ZMAT3Q9HA38 289 aaKnown RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 GHRLQ9UBU3 117 aa7.64□□□□□ -1.19
LDLR-211ENST00000560173 UBE2J1Q9Y385 318 aaPredicted RBP7.64□□□□□ -1.19
LDLR-211ENST00000560173 KIAA2026Q5HYC2 2103 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 TRGV10A0A0A0MS01 117 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 TRIM77I1YAP6 450 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 CRTAPO75718 401 aaPredicted RBP7.63□□□□□ -1.19
LDLR-211ENST00000560173 MELTFP08582 738 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 CLEC2LP0C7M8 214 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 UBBP0CG47 229 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 IGHV1-8P0DP01 117 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 MGMTP16455 207 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 COX7A1P24310 79 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 SAA4P35542 130 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 KCNJ3P48549 501 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 PITPNAQ00169 270 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 SLC9A3R2Q15599 337 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 TAF9Q16594 264 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 MIDNQ504T8 468 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 KRBOX4Q5JUW0 171 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 HACD4Q5VWC8 232 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 RSBN1Q5VWQ0 802 aaPredicted RBP7.63□□□□□ -1.19
LDLR-211ENST00000560173 FAM131AQ6UXB0 335 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 Q6YL49 198 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 TRAPPC6BQ86SZ2 158 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 LDLRAD3Q86YD5 345 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 SUMF2Q8NBJ7 301 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 OR6M1Q8NGM8 313 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 PLPPR1Q8TBJ4 325 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 FAM216AQ8WUB2 273 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 CORO2AQ92828 525 aa7.63□□□□□ -1.19
LDLR-211ENST00000560173 ZDHHC16Q969W1 377 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms