RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 MKXQ8IYA7 352 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 SAXO1Q8IYX7 474 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 SAMD12Q8N8I0 201 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 C19orf18Q8NEA5 215 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 NUP37Q8NFH4 326 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 PXT1Q8NFP0 134 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 OR51A2Q8NGJ7 313 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 OR13C9Q8NGT0 318 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 OR13G1Q8NGZ3 307 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 OR10AC1Q8NH08 325 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 PIGCQ92535 297 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 SLC7A6Q92536 515 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 FAM46BQ96A09 425 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 S100PBPQ96BU1 408 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 CMBLQ96DG6 245 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 ADAT3Q96EY9 351 aaPredicted RBP4.33□□□□□ -1.72
LDLR-209ENST00000558528 LYZL4Q96KX0 146 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 WWC2-AS2Q96NR7 200 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 RTL8AQ9BWD3 113 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 BARHL1Q9BZE3 327 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 TMEM100Q9NV29 134 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 TAS2R8Q9NYW2 309 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 PTTG3PQ9NZH4 202 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 NPAP1Q9NZP6 1156 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 ZNF319Q9P2F9 582 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 STARD10Q9Y365 291 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 PKD1L1Q8TDX9 2849 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 RTTNQ86VV8 2226 aa4.33□□□□□ -1.72
LDLR-209ENST00000558528 IGHV2OR16-5A0A0B4J2B6 119 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 IGHV1-18A0A0C4DH31 117 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 PLSCR5A0PG75 271 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 IQCF6A8MYZ5 107 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 M0R1B8 84 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 ZNHIT1O43257 154 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 HPGDSO60760 199 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 ACAA1P09110 424 aaPredicted RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 CECR9P0C854 216 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 SLC2A2P11168 524 aaPredicted RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 GTF2F2P13984 249 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 KITLGP21583 273 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 GNLYP22749 145 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 PTGFRP43088 359 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 POU3F4P49335 361 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 ATP5IP56385 69 aaPredicted RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 CAV3P56539 151 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 OR10A3P58181 314 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 GNG3P63215 75 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 SSBP1Q04837 148 aaKnown RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 SNTB2Q13425 540 aaKnown RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 ZMYND11Q15326 602 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 TAB1Q15750 504 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 UBE2V2Q15819 145 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 RGS21Q2M5E4 152 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 PRR30Q53SZ7 412 aaPredicted RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 PYDC2Q56P42 97 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 BEX5Q5H9J7 111 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 TMEM69Q5SWH9 247 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 HES5Q5TA89 166 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 TRIQKQ629K1 86 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 PLCXD3Q63HM9 321 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 AWAT2Q6E213 333 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 FAM166AQ6J272 317 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 CNIH2Q6PI25 160 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 FIP1L1Q6UN15 594 aaKnown RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 GLIPR1L1Q6UWM5 242 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 LINC00596Q86U02 117 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 RTN4RL2Q86UN3 420 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 FJX1Q86VR8 437 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 Q8IYB0 196 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 ZNF101Q8IZC7 436 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 SYT8Q8NBV8 401 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 OR8G5Q8NG78 346 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 OR51D1Q8NGF3 324 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 OR5M8Q8NGP6 311 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 OR8S1Q8NH09 359 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 SYNPRQ8TBG9 265 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 FCAMRQ8WWV6 532 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 RNF170Q96K19 258 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 C7orf50Q9BRJ6 194 aaKnown RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 PAPOLGQ9BWT3 736 aaKnown RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 PKIBQ9C010 78 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 AAMDCQ9H7C9 122 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 ZNF442Q9H7R0 627 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 Q9N2K0 584 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 OR5V1Q9UGF6 321 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 GLS2Q9UI32 602 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 PURGQ9UJV8 347 aaKnown RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 ING4Q9UNL4 249 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 MRPS28Q9Y2Q9 187 aaKnown RBP4.32□□□□□ -1.72
LDLR-209ENST00000558528 POLDIP2Q9Y2S7 368 aa4.32□□□□□ -1.72
LDLR-209ENST00000558528 A0A1W2PR80 420 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 NAP1L6A6NFF2 107 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 TUBAL3A6NHL2 446 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ZNF850A8MQ14 1090 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 TRAPPC2LH3BP13 241 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 H3BSH0 61 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 GABARAPH6UMI1 98 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 HSPA12AO43301 675 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 AKR7A2O43488 359 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 TIMM8AO60220 97 aaPredicted RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms