RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TLE1Q04724 770 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 FAM185AQ8N0U4 392 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 MRPL30Q8TCC3 161 aaKnown RBP14.26□□□□□ -0.13
LDLR-206ENST00000557958 NMES1Q9C002 83 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 HES4Q9HCC6 221 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 MAB21L2Q9Y586 359 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 COL6A6A6NMZ7 2263 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 C13orf42A0A1B0GVH6 325 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 PPYP01298 95 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 RPS2P15880 293 aaKnown RBP14.25□□□□□ -0.13
LDLR-206ENST00000557958 SERPINF1P36955 418 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 UQCRFS1P47985 274 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 SMIM21Q3B7S5 101 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 TMEM65Q6PI78 240 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 TMEM108Q6UXF1 575 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 Q6ZR03 302 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 OR4A4PQ8NGN8 299 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 THAP6Q8TBB0 222 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 PPP1R1CQ8WVI7 109 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 WDR89Q96FK6 387 aaPredicted RBP14.25□□□□□ -0.13
LDLR-206ENST00000557958 METTL8Q9H825 291 aaKnown RBP14.25□□□□□ -0.13
LDLR-206ENST00000557958 MSL2Q9HCI7 577 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 DUSP13Q9UII6 198 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 ZSCAN5BA6NJL1 495 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 SLC25A4P12235 298 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 S100A11P31949 105 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 NKX6-1P78426 367 aaPredicted RBP14.25□□□□□ -0.13
LDLR-206ENST00000557958 OPCMLQ14982 345 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 IGSF11Q5DX21 431 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 Q6ZPA2 131 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 COMMD7Q86VX2 200 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 LRRC20Q8TCA0 184 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 SEC22AQ96IW7 307 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 PCDHB10Q9UN67 800 aa14.25□□□□□ -0.13
LDLR-206ENST00000557958 hCG_1807616A0A1W2PRN6 198 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 SIRPB1O00241 398 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 SLC33A1O00400 549 aaPredicted RBP14.24□□□□□ -0.13
LDLR-206ENST00000557958 BET1O15155 118 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 HAND1O96004 215 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 RRASP10301 218 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 CXCL2P19875 107 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 AADACP22760 399 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 CD200P41217 278 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 HLA-DRB3P79483 266 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 SNTB1Q13884 538 aaKnown RBP14.24□□□□□ -0.13
LDLR-206ENST00000557958 ANKRD55Q3KP44 614 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 C11orf87Q6NUJ2 197 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 ZNF880Q6PDB4 577 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 ZNF546Q86UE3 836 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 ZNF565Q8N9K5 539 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 OR2Z1Q8NG97 314 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 RTN4IP1Q8WWV3 396 aaPredicted RBP14.24□□□□□ -0.13
LDLR-206ENST00000557958 GALNT14Q96FL9 552 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 SUCNR1Q9BXA5 334 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 MFFQ9GZY8 342 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 LIME1Q9H400 295 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 NAA60Q9H7X0 242 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 SLC2A9Q9NRM0 540 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 RASL12Q9NYN1 266 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 JKAMPQ9P055 326 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 KIF25Q9UIL4 384 aa14.24□□□□□ -0.13
LDLR-206ENST00000557958 NKX2-6A6NCS4 301 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 IFNA21P01568 189 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 PET100P0DJ07 73 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 PTAFRP25105 342 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 CD40P25942 277 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 RAB14P61106 215 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 ADORA2A-AS1P86434 159 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 WDR82Q6UXN9 313 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 C22orf34Q6ZV56 151 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 RSRP1Q9BUV0 290 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 TAAR3PQ9P1P4 343 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 TRAV14DV4A0A0A6YYC5 116 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 A0A0D9SG52 128 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 IGHV3-64DA0A0J9YX35 117 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 RP2O75695 350 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 SCTP09683 121 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 S100GP29377 79 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 CHRNB4P30926 498 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 KCNJ3P48549 501 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 LRRC37A5PQ49AS3 106 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 PRAMEF6Q5VXH4 476 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 ZNF497Q6ZNH5 498 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 OR10J5Q8NHC4 309 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 CA5BP1Q8WTZ4 195 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 BBC3Q96PG8 261 aaPredicted RBP14.23□□□□□ -0.13
LDLR-206ENST00000557958 GSX2Q9BZM3 304 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 ARL6Q9H0F7 186 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 NARFLQ9H6Q4 476 aa14.23□□□□□ -0.13
LDLR-206ENST00000557958 ERRFI1Q9UJM3 462 aaPredicted RBP14.23□□□□□ -0.13
LDLR-206ENST00000557958 IGLV3-9A0A075B6K5 115 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 ATP6V1G2-DDX39BF2Z307 99 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 PSMB6P28072 239 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 CCKARP32238 428 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 SRPXP78539 464 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 ZNF345Q14585 488 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 AANATQ16613 207 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 ACP7Q6ZNF0 438 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 TMUB2Q71RG4 321 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 C11orf53Q8IXP5 236 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms