RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ZNF596Q8TC21 504 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 EMG1Q92979 244 aaKnown RBP7.94□□□□□ -1.14
SCFD1-220ENST00000556486 CREB3L1Q96BA8 519 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 SPSB1Q96BD6 273 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 IL4I1Q96RQ9 567 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 GAL3ST2Q9H3Q3 398 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 HMG20AQ9NP66 347 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 RBFOX1Q9NWB1 397 aaKnown RBP7.94□□□□□ -1.14
SCFD1-220ENST00000556486 TAS2R3Q9NYW6 316 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 HHLA2Q9UM44 414 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 HILPDAQ9Y5L2 63 aa7.94□□□□□ -1.14
SCFD1-220ENST00000556486 TSSC4Q9Y5U2 329 aaPredicted RBP7.94□□□□□ -1.14
SCFD1-220ENST00000556486 LOC107986453A0A1B0GWG9 222 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 FUOMA2VDF0 154 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 OOSP1A8MZH6 123 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 G3V2T6 193 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 LY6LH3BQJ8 138 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 M0QZK8 103 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 MITFO75030 526 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-220ENST00000556486 MMP23AO75900 390 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 RPP14O95059 124 aaKnown RBP7.93□□□□□ -1.14
SCFD1-220ENST00000556486 SCGB1D1O95968 90 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 MT-ND2P03891 347 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 NHLRC4P0CG21 123 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-220ENST00000556486 PRKACBP22694 351 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 GABRR1P24046 479 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 CD24P25063 80 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 NPBWR2P48146 333 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 ARHGDIBP52566 201 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 ATP1B3P54709 279 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 ABHD12Q8N2K0 398 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 TPRX1Q8N7U7 411 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 OR8J1Q8NGP2 316 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 NDNFQ8TB73 568 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 BCAS4Q8TDM0 211 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 RBM14Q96PK6 669 aaKnown RBP7.93□□□□□ -1.14
SCFD1-220ENST00000556486 DUX3Q96PT4 197 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 MBOAT4Q96T53 435 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 GABARAPL3Q9BY60 117 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 CHST6Q9GZX3 395 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 COMMD4Q9H0A8 199 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 PLEKHA2Q9HB19 425 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 IL36RNQ9UBH0 155 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 GLS2Q9UI32 602 aa7.93□□□□□ -1.14
SCFD1-220ENST00000556486 STARD9Q9P2P6 4700 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 TRGV10A0A0A0MS01 117 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 LEUTXA8MZ59 168 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 H0YHG0 523 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 KDM4BO94953 1096 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 CLIC3O95833 236 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 CYB5AP00167 134 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 BCL3P20749 454 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 PPIFP30405 207 aaKnown RBP7.92□□□□□ -1.14
SCFD1-220ENST00000556486 CEACAM3P40198 252 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 KIR3DL2P43630 455 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 MTCP1P56278 107 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 PAX5Q02548 391 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 PDZK1IP1Q13113 114 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 TMEM244Q5VVB8 128 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 CCDC144NLQ6NUI1 221 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 ADAMTSL5Q6ZMM2 481 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 SAXO1Q8IYX7 474 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 CHST4Q8NCG5 386 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 OR4X2Q8NGF9 303 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 OR2G2Q8NGZ5 317 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 ST8SIA2Q92186 375 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 RFKQ969G6 155 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 ADAT3Q96EY9 351 aaPredicted RBP7.92□□□□□ -1.14
SCFD1-220ENST00000556486 SLC25A33Q9BSK2 321 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 NCOR1P1Q9H4R4 102 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 LINC00574Q9H8X3 128 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 PALMDQ9NP74 551 aa7.92□□□□□ -1.14
SCFD1-220ENST00000556486 KIAA2026Q5HYC2 2103 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 IGKV1-12A0A0C4DH73 117 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 ODAMA1E959 279 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 FAM90A12PA8MX19 464 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 BUB1B-PAK6H3BSN5 160 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 J3QRE1 110 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 SH2D1BO14796 132 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 OR2H2O95918 312 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 IGKV1D-12P01611 117 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 FAM90A13PP0C7W8 464 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 FAM90A24PP0C7X0 464 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 LYL1P12980 280 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 PRKACAP17612 351 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 ATF1P18846 271 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 CDK2P24941 298 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 DUSP1P28562 367 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 SLC6A1P30531 599 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 LUMP51884 338 aaPredicted RBP7.91□□□□□ -1.14
SCFD1-220ENST00000556486 RAB25P57735 213 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 DGCR2P98153 550 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 ZNF85Q03923 595 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 ODF4Q2M2E3 257 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 HLA-DRB5Q30154 266 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 ABCA11PQ4W5N1 156 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 C9orf152Q5JTZ5 239 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 SLC25A30Q5SVS4 291 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 FAM220AQ7Z4H9 259 aa7.91□□□□□ -1.14
SCFD1-220ENST00000556486 OSR2Q8N2R0 312 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms