RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 KIF25Q9UIL4 384 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 LSM2Q9Y333 95 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 MEIKINA0A087WXM9 373 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A10PA6NDY2 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A18PA6NE21 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A16PA6NEW6 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A20PA6NIJ5 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A7PA6NKC0 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A12PA8MX19 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A5PA8MXJ8 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A23PA8MXZ1 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 LEUTXA8MZ59 168 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 LY6LH3BQJ8 138 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 F2RL2O00254 374 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 PIN1P1O15428 100 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A15PP0C7V4 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A13PP0C7W8 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A14PP0C7W9 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A24PP0C7X0 464 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 PRRX1P54821 245 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 AQP4P55087 323 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 SLC35A2P78381 396 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 GPR50Q13585 617 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 IRF3Q14653 427 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 HERPUD1Q15011 391 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 BAIAP2L2Q6UXY1 529 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 OR13A1Q8NGR1 328 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 OR9G1Q8NH87 305 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 PLPPR1Q8TBJ4 325 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 ORAI1Q96D31 301 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 SCN3BQ9NY72 215 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 GHRLQ9UBU3 117 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 ING4Q9UNL4 249 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 HILPDAQ9Y5L2 63 aa12.9□□□□□ -0.34
CCDC88C-209ENST00000554872 KIAA2026Q5HYC2 2103 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 BUB1B-PAK6H3BSN5 160 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 H3BUI4 141 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 HSPB6O14558 160 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 GEMIN2O14893 280 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 SC5DO75845 299 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 OR7C1O76099 320 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 MYF6P23409 242 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 BRS3P32247 399 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 GLP1RP43220 463 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 CCDC144NLQ6NUI1 221 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 UNQ9370/PRO34162Q6UXP9 181 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 GAPTQ8N292 157 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 WIPF2Q8TF74 440 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 PHYHIPQ92561 330 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 NKX3-1Q99801 234 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 MMP28Q9H239 520 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 VCX3BQ9H321 246 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 DUSP21Q9H596 190 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 LIN7BQ9HAP6 207 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 SERTAD4Q9NUC0 356 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 IDI2-AS1Q9NZ38 188 aa12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 MRPS28Q9Y2Q9 187 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 AMMECR1Q9Y4X0 333 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-209ENST00000554872 WNK1Q9H4A3 2382 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 TMEM30CPA0ZSE6 113 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 GLAP06280 429 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 CD37P11049 281 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 GZMHP20718 246 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 SERPINA2P20848 420 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 RAB13P51153 203 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 SPHARQ15513 63 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 C2orf68Q2NKX9 166 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 SLC22A6Q4U2R8 563 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 PLA1AQ53H76 456 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 TPTE2P1Q5T6R2 138 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 ZNF497Q6ZNH5 498 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 OR52M1Q8NGK5 317 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 MUL1Q969V5 352 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 AKR1E2Q96JD6 320 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 PRSS22Q9GZN4 317 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 ZNF581Q9P0T4 197 aa12.88□□□□□ -0.35
CCDC88C-209ENST00000554872 PNMA8CA0A1B0GUJ8 204 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 H0YHG0 523 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 TOR1AO14656 332 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 CA11O75493 328 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 HSPA13P48723 471 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 TMEM30BQ3MIR4 351 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 Q3ZCU0 254 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 GLIPR1L1Q6UWM5 242 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 Q6ZTK2 550 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 TMEM219Q86XT9 240 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 JAGN1Q8N5M9 183 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 KLHDC1Q8N7A1 406 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 C8orf31Q8N9H6 132 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 WNT10AQ9GZT5 417 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 ISYNA1Q9NPH2 558 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 SIGLEC9Q9Y336 463 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 TPRKBQ9Y3C4 175 aa12.87□□□□□ -0.35
CCDC88C-209ENST00000554872 A0A1W2PP11 408 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 PTGES3LE9PB15 166 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 C15orf65H3BRN8 121 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 J3QR06 171 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 ORC5O43913 435 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 UBBP0CG47 229 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 RBM39Q14498 530 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms