RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 LIAT1Q6ZQX7 453 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 RTN4RL2Q86UN3 420 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 SUMF2Q8NBJ7 301 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 MUL1Q969V5 352 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 DPCDQ9BVM2 203 aaPredicted RBP8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 BARHL1Q9BZE3 327 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 ZNF286AQ9HBT8 521 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 FBLN5Q9UBX5 448 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 KIF25Q9UIL4 384 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 TCF19Q9Y242 345 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 SIGLEC9Q9Y336 463 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 NBEAL2Q6ZNJ1 2754 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 MEIKINA0A087WXM9 373 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM172BPA6NC97 362 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A22PA8MWA6 464 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 NPIPB11E5RHQ5 1161 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 SC5DO75845 299 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 OR7C1O76099 320 aaPredicted RBP8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 CSTBP04080 98 aaKnown RBP8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 GTF2F2P13984 249 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 SERPINA2P20848 420 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 CRHBPP24387 322 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 HTR1DP28221 377 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 MPV17LQ2QL34 196 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 ACSM3Q53FZ2 586 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM27D1Q5T7N8 215 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 GLIPR1L1Q6UWM5 242 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 LINC00596Q86U02 117 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 JAGN1Q8N5M9 183 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 MS4A15Q8N5U1 240 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 ZNF565Q8N9K5 539 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 OR4D6Q8NGJ1 314 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 NDNFQ8TB73 568 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 KIRREL1Q96J84 757 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 S100A13Q99584 98 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 RANBP3Q9H6Z4 567 aaPredicted RBP8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 PCDHB16Q9NRJ7 776 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 CALYQ9NYX4 217 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 DPM3Q9P2X0 92 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 RAB26Q9ULW5 256 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 MRPS28Q9Y2Q9 187 aaKnown RBP8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 TPRKBQ9Y3C4 175 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 HILPDAQ9Y5L2 63 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 VWFP04275 2813 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 CMYA5Q8N3K9 4069 aa8.27□□□□□ -1.09
CCDC88C-206ENST00000553437 TRAV39A0A0B4J263 110 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 LY6LH3BQJ8 138 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 DENRO43583 198 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 IL1AP01583 271 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 CD37P11049 281 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 MAPK3P27361 379 aaPredicted RBP8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 GABRA5P31644 462 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 GLP1RP43220 463 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 EFNB2P52799 333 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 GPR50Q13585 617 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 TPBGQ13641 420 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 GPR176Q14439 515 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 BRICD5Q6PL45 260 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 LRRTM1Q86UE6 522 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 TMEM219Q86XT9 240 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 NKAIN3Q8N8D7 197 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 TMEM104Q8NE00 496 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 ZNF596Q8TC21 504 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 MRGPRDQ8TDS7 321 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 THRSPQ92748 146 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 MRPS24Q96EL2 167 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 CYYR1Q96J86 154 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 TMED9Q9BVK6 235 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 RAB18Q9NP72 206 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 ABCB10Q9NRK6 738 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 IDI2-AS1Q9NZ38 188 aa8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 RCC2Q9P258 522 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-206ENST00000553437 LEUTXA8MZ59 168 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 BUB1B-PAK6H3BSN5 160 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 KCNAB3O43448 404 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 RGS10O43665 173 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 MT-ND4P03905 459 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 SSTR5P35346 364 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 MED22Q15528 200 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 HLA-DRB5Q30154 266 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 ATAD3CQ5T2N8 411 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 LIPKQ5VXJ0 399 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 AWAT2Q6E213 333 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 ZNF497Q6ZNH5 498 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 TMEM91Q6ZNR0 172 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 PRSS48Q7RTY5 328 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 CEACAM19Q7Z692 300 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 Q8N2B8 174 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 OR4C13Q8NGP0 309 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 RFESDQ8TAC1 157 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 PHYHIPQ92561 330 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 UQCC2Q9BRT2 126 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 NPFFR1Q9GZQ6 430 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 BANF2Q9H503 90 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 ZNF702PQ9H963 129 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 ISYNA1Q9NPH2 558 aa8.25□□□□□ -1.09
CCDC88C-206ENST00000553437 TMEM30CPA0ZSE6 113 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A10PA6NDY2 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A18PA6NE21 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A16PA6NEW6 464 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms