RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 KLHL12Q53G59 568 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 LCE1FQ5T754 118 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 HS3ST5Q8IZT8 346 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 OR11L1Q8NGX0 322 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 OR52N1Q8NH53 320 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 CCDC42Q96M95 316 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 STACQ99469 402 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 MS4A8Q9BY19 250 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 MROQ9BYG7 248 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 OR51B6Q9H340 312 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 GLS2Q9UI32 602 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 BTRCQ9Y297 605 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 ANKRD12Q6UB98 2062 aa3.72□□□□□ -1.81
SCFD1-208ENST00000553278 PTPRKQ15262 1439 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 DOCK8Q8NF50 2099 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 TMEM250H0YL14 139 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 M0QYV0 167 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 TRAPPC3O43617 180 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 DCTN3O75935 186 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 RPP14O95059 124 aaKnown RBP3.71□□□□□ -1.82
SCFD1-208ENST00000553278 CISD3P0C7P0 127 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 RPS12P25398 132 aaKnown RBP3.71□□□□□ -1.82
SCFD1-208ENST00000553278 ACSM3Q53FZ2 586 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 CENPWQ5EE01 88 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 TMEM215Q68D42 235 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 SCGB1D4Q6XE38 83 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 SAXO1Q8IYX7 474 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 OR4C13Q8NGP0 309 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 OR5K1Q8NHB7 308 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 HAVCR2Q8TDQ0 301 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 SLC37A2Q8TED4 501 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 ANKRD7Q92527 254 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 PPP1R36Q96LQ0 422 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 TIPINQ9BVW5 301 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 VSIRQ9H7M9 311 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 UBQLN4Q9NRR5 601 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 YTHDF2Q9Y5A9 579 aaKnown RBP3.71□□□□□ -1.82
SCFD1-208ENST00000553278 CROCCQ5TZA2 2017 aa3.71□□□□□ -1.82
SCFD1-208ENST00000553278 CLUHO75153 1309 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 IGSF9BQ9UPX0 1349 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 GMNCA6NCL1 334 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 OR7C2O60412 319 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 MED6O75586 246 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 LYPLA2O95372 231 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 RPS17P08708 135 aaKnown RBP3.7□□□□□ -1.82
SCFD1-208ENST00000553278 LINC00869P0C866 280 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 GTF2F2P13984 249 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 AP3S2P59780 193 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 ACTBP60709 375 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 RAB2AP61019 212 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 ACTG1P63261 375 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 ELF3P78545 371 aaPredicted RBP3.7□□□□□ -1.82
SCFD1-208ENST00000553278 REEP5Q00765 189 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 PPP1R1AQ13522 171 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 TMEM31Q5JXX7 168 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 FAM222AQ5U5X8 452 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 NT5DC3Q86UY8 548 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 ZNF101Q8IZC7 436 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 OR2M3Q8NG83 312 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 OR8K1Q8NGG5 319 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 OR5D18Q8NGL1 313 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 UBALD1Q8TB05 177 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 DOK1Q99704 481 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 ZSCAN16Q9H4T2 348 aaPredicted RBP3.7□□□□□ -1.82
SCFD1-208ENST00000553278 PARVAQ9NVD7 372 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 TMEM216Q9P0N5 145 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 RWDD2AQ9UIY3 292 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 CELA1Q9UNI1 258 aa3.7□□□□□ -1.82
SCFD1-208ENST00000553278 A0A1W2PP64 1363 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.69□□□□□ -1.82
SCFD1-208ENST00000553278 K7EPK0 472 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 CCNKO75909 580 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 KRTAP1-4P0C5Y4 121 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 CD28P10747 220 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 GADD45AP24522 165 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 PSMA1P25786 263 aaKnown RBP3.69□□□□□ -1.82
SCFD1-208ENST00000553278 MIPP30301 263 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 SULT1A2P50226 295 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 H2BFSP57053 126 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 KRTAP10-6P60371 365 aaPredicted RBP3.69□□□□□ -1.82
SCFD1-208ENST00000553278 ZNF678Q5SXM1 525 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 HENMT1Q5T8I9 393 aaKnown RBP3.69□□□□□ -1.82
SCFD1-208ENST00000553278 ZFP2Q6ZN57 461 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 VN1R4Q7Z5H5 301 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 DPPA2Q7Z7J5 298 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 CDC26Q8NHZ8 85 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 C2orf15Q8WU43 125 aaKnown RBP3.69□□□□□ -1.82
SCFD1-208ENST00000553278 RNF5Q99942 180 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 VCXQ9H320 206 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 LOXHD1Q8IVV2 1947 aa3.69□□□□□ -1.82
SCFD1-208ENST00000553278 DOCK9Q9BZ29 2069 aa3.68□□□□□ -1.82
SCFD1-208ENST00000553278 OR6C70A6NIJ9 312 aa3.68□□□□□ -1.82
SCFD1-208ENST00000553278 TMEM114B3SHH9 223 aa3.68□□□□□ -1.82
SCFD1-208ENST00000553278 KCNK1O00180 336 aa3.68□□□□□ -1.82
SCFD1-208ENST00000553278 KCNK2O95069 426 aa3.68□□□□□ -1.82
SCFD1-208ENST00000553278 HBZP02008 142 aa3.68□□□□□ -1.82
SCFD1-208ENST00000553278 CTXN2P0C2S0 81 aa3.68□□□□□ -1.82
SCFD1-208ENST00000553278 MLNP12872 115 aa3.68□□□□□ -1.82
SCFD1-208ENST00000553278 RPL12P30050 165 aaKnown RBP3.68□□□□□ -1.82
SCFD1-208ENST00000553278 SLCO1A2P46721 670 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms