RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 DUX4L9Q6RFH8 374 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-208ENST00000551691 UGT2A3Q6UWM9 527 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 GSG1LQ6UXU4 331 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF620Q6ZNG0 422 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 MRPL21Q7Z2W9 205 aaKnown RBP2.81□□□□□ -1.96
LIMA1-208ENST00000551691 RIBC1Q8N443 379 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF433Q8N7K0 673 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF615Q8N8J6 731 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 C8orf31Q8N9H6 132 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 LRRC75AQ8NAA5 344 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 DEFB108BQ8NET1 73 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 OR4K17Q8NGC6 315 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 OR1N2Q8NGR9 330 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 OR52E5Q8NH55 327 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 ACOT11Q8WXI4 607 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-208ENST00000551691 SERPINB12Q96P63 405 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 MICU1Q9BPX6 476 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 ECSITQ9BQ95 431 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 FAIM2Q9BWQ8 316 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 GNB4Q9HAV0 340 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF275Q9NSD4 429 aaPredicted RBP2.81□□□□□ -1.96
LIMA1-208ENST00000551691 CALYQ9NYX4 217 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 DUX4Q9UBX2 424 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 ZMAT5Q9UDW3 170 aaKnown RBP2.81□□□□□ -1.96
LIMA1-208ENST00000551691 VSIG4Q9Y279 399 aa2.81□□□□□ -1.96
LIMA1-208ENST00000551691 HSPG2P98160 4391 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 PKHD1P08F94 4074 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 IGKV1D-8A0A087WSZ0 117 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 IGHV3-35A0A0C4DH35 117 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 A0A0G2JRQ6 117 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 CIB4A0PJX0 185 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 FAM231BA6NCW3 169 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 C12orf77C9JDV5 145 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 H3BNH8 94 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 J3QLI3 93 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 hCG_2039718K7EN88 272 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 TRAF3IP2O43734 574 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 PROSCO94903 275 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 HBE1P02100 147 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 ARG1P05089 322 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF250P15622 560 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 ZP3P21754 424 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 NPBWR2P48146 333 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 DSCR4P56555 118 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 IGLV3-21P80748 117 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF45Q02386 682 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 SLAQ13239 276 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 GPR176Q14439 515 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 USF2Q15853 346 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 PRR4Q16378 134 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 KCTD19Q17RG1 926 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 C18orf21Q32NC0 220 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 NIPAL1Q6NVV3 410 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF343Q6P1L6 599 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 C1orf94Q6P1W5 598 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 BRD3OSQ6XYD6 125 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 Q6ZSR3 168 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 Q6ZT83 130 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 HDDC2Q7Z4H3 204 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 FAM220AQ7Z4H9 259 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 IQCF2Q8IXL9 164 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 ST13P4Q8IZP2 240 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 RNF175Q8N4F7 328 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 OR2M3Q8NG83 312 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 TCP10LQ8TDR4 215 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 GEMIN6Q8WXD5 167 aaKnown RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 CHCHD10Q8WYQ3 142 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 TMBIM1Q969X1 311 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 RNF170Q96K19 258 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 P2RX4Q99571 388 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF184Q99676 751 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-208ENST00000551691 CA10Q9NS85 328 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 KIF25Q9UIL4 384 aa2.8□□□□□ -1.96
LIMA1-208ENST00000551691 IGHV1-18A0A0C4DH31 117 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 A0A1W2PRF3 423 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 A0A1W2PRM7 423 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 SRRM5B3KS81 715 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF780AO75290 641 aaPredicted RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 MPDU1O75352 247 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 SERF1AO75920 110 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 GPR75O95800 540 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 SEMG1P04279 462 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 GKN3PP0CG01 181 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 CPMP14384 443 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 GABRR1P24046 479 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 ARR3P36575 388 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 SERPINB5P36952 375 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 CDKN2BP42772 138 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 PPOXP50336 477 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 DLX1P56177 255 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 NUTF2P61970 127 aaKnown RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 REEP5Q00765 189 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 PLCXD2Q0VAA5 305 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 MAD2L1BPQ15013 274 aaPredicted RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 GABRA6Q16445 453 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 TRMT5Q32P41 509 aaKnown RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 ATAD3CQ5T2N8 411 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 TPTE2P1Q5T6R2 138 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 UBE2UQ5VVX9 321 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 KHDRBS2Q5VWX1 349 aaKnown RBP2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms