RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 FGF7P21781 194 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 SUCLG1P53597 346 aaKnown RBP14.12□□□□□ -0.15
CUX1-213ENST00000549414 GNB1P62873 340 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 OR5A2Q8NGI9 324 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 SHARPINQ9H0F6 387 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 DOCK10Q96BY6 2186 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 HELZP42694 1942 aaKnown RBP14.12□□□□□ -0.15
CUX1-213ENST00000549414 TRGV10A0A0A0MS01 117 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 ZNF705FA8MVS1 300 aaPredicted RBP14.12□□□□□ -0.15
CUX1-213ENST00000549414 SYNGR1O43759 233 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 ZIC3O60481 467 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 IGHMP01871 453 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 ZNF705DP0CH99 300 aaPredicted RBP14.12□□□□□ -0.15
CUX1-213ENST00000549414 ZNF705BP0CI00 300 aaPredicted RBP14.12□□□□□ -0.15
CUX1-213ENST00000549414 TMEM11P17152 192 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 C4orf17Q53FE4 359 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 BVESQ8NE79 360 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 UHRF2Q96PU4 802 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 MMP26Q9NRE1 261 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 AMDHD2Q9Y303 409 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 MT-ND4LP03901 98 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 DTYMKP23919 212 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 MRPL14Q6P1L8 145 aaKnown RBP14.12□□□□□ -0.15
CUX1-213ENST00000549414 IL34Q6ZMJ4 242 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 MOB1BQ7L9L4 216 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 SMIM7Q9BQ49 75 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 GPR132Q9UNW8 380 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 DEFA4P12838 97 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 ZP1P60852 638 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 NUFIP2Q7Z417 695 aaKnown RBP14.11□□□□□ -0.15
CUX1-213ENST00000549414 MRGPRFQ96AM1 343 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 PHYHIPLQ96FC7 376 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 NPIPB7O75200 414 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 NMBP08949 121 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 NPBWR2P48146 333 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 KLF3P57682 345 aaPredicted RBP14.11□□□□□ -0.15
CUX1-213ENST00000549414 VAX1Q5SQQ9 334 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 COMMD5Q9GZQ3 224 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 SSUH2Q9Y2M2 353 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 MDFIC2A0A1B0GVS7 189 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 LINC00862A6NCI5 91 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 DHRS7CA6NNS2 312 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 H7BYZ3 331 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 MGST1P10620 155 aaKnown RBP14.11□□□□□ -0.15
CUX1-213ENST00000549414 PMELP40967 661 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 RAB5CP51148 216 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 TUSC1Q2TAM9 212 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 TMEM211Q6ICI0 200 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 TMEM105Q8N8V8 129 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 WNT5BQ9H1J7 359 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 MMP24Q9Y5R2 645 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 PLXND1Q9Y4D7 1925 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 SCTP09683 121 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 SLC25A6P12236 298 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 C2orf68Q2NKX9 166 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 FANCMQ8IYD8 2048 aa14.11□□□□□ -0.15
CUX1-213ENST00000549414 TMEM14DPA8MWL7 114 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 PRF1P14222 555 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 VDAC1P21796 283 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 AESQ08117 197 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 ZNF154Q13106 437 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 ENDOGQ14249 297 aaKnown RBP14.1□□□□□ -0.15
CUX1-213ENST00000549414 EIF2S3LQ2VIR3 472 aaKnown RBP14.1□□□□□ -0.15
CUX1-213ENST00000549414 KCNIP4Q6PIL6 250 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 HIST2H3AQ71DI3 136 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 IMMP1LQ96LU5 166 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 SHANK1Q9Y566 2161 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 IGLV3-12A0A075B6K2 115 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 HAND1O96004 215 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 FGF8P55075 233 aaPredicted RBP14.1□□□□□ -0.15
CUX1-213ENST00000549414 IL13RA2Q14627 380 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 TMEM108Q6UXF1 575 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 ZNF826PQ6ZT77 177 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 LOXL4Q96JB6 756 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 TAAR6Q96RI8 345 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 DYNLT3P51808 116 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 ANKRD55Q3KP44 614 aa14.1□□□□□ -0.15
CUX1-213ENST00000549414 ZNF660Q6AZW8 331 aaPredicted RBP14.1□□□□□ -0.15
CUX1-213ENST00000549414 HSD17B13Q7Z5P4 300 aaPredicted RBP14.1□□□□□ -0.15
CUX1-213ENST00000549414 ARPC4-TTLL3A0A0A6YYG9 625 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 SLC25A4P12235 298 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 COX5AP20674 150 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 TNFAIP6P98066 277 aaPredicted RBP14.09□□□□□ -0.15
CUX1-213ENST00000549414 SLC38A11Q08AI6 406 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 PTPN13Q12923 2485 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 MOGAT3Q86VF5 341 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 NANPQ8TBE9 248 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 ACTR3CQ9C0K3 210 aaPredicted RBP14.09□□□□□ -0.15
CUX1-213ENST00000549414 NPIPB13A6NJU9 1138 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 NPIPB4C9JG80 1138 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 RPL36A-HNRNPH2H7BZ11 118 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 BTCP35070 178 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 SSTP61278 116 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 MPV17LQ2QL34 196 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 CLRN3Q8NCR9 226 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 CIB3Q96Q77 187 aaPredicted RBP14.09□□□□□ -0.15
CUX1-213ENST00000549414 DDA1Q9BW61 102 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 CXXC4Q9H2H0 198 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 C5orf66Q9H5L9 145 aa14.09□□□□□ -0.15
CUX1-213ENST00000549414 ATXN7O15265 892 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms