RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 A0A1W2PPQ1 181 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 hDV102S1A0JD36 115 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 C5orf52A6NGY3 159 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF878C9JN71 531 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 K7N7A8 449 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 CST4P01036 141 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 IGHG2P01859 326 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 IFNA8P32881 189 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 OMPP47874 163 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF121P58317 390 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-204ENST00000549064 GABPB1Q06547 395 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-204ENST00000549064 GPR50Q13585 617 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 EDDM3AQ14507 147 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 SMIM21Q3B7S5 101 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 UTF1Q5T230 341 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 EPGNQ6UW88 154 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 EIF1ADQ8N9N8 165 aaKnown RBP4.99□□□□□ -1.61
LIMA1-204ENST00000549064 POC1AQ8NBT0 407 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 NEXN-AS1Q8NBZ9 246 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 OR4C15Q8NGM1 316 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF671Q8TAW3 534 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 C4orf3Q8WVX3 66 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 OR5B12Q96R08 314 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 NABP2Q9BQ15 211 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 ROPN1BQ9BZX4 212 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-204ENST00000549064 ROPN1Q9HAT0 212 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-204ENST00000549064 GNB4Q9HAV0 340 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 KCNG2Q9UJ96 466 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 COMMD3-BMI1R4GMX3 469 aa4.99□□□□□ -1.61
LIMA1-204ENST00000549064 A0A1W2PP11 408 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 DHRS12A0PJE2 317 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 LEUTXA8MZ59 168 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 OVOL1O14753 267 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF737O75373 536 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 B3GALNT1O75752 331 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 NXPH2O95156 264 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 IGLV1-47P01700 117 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 OR8U8P0C7N1 319 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 CFL1P23528 166 aaKnown RBP4.98□□□□□ -1.61
LIMA1-204ENST00000549064 HSD11B1P28845 292 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 SEC61BP60468 96 aaKnown RBP4.98□□□□□ -1.61
LIMA1-204ENST00000549064 GNB1P62873 340 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 GNG3P63215 75 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 CBX1P83916 185 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 BDH1Q02338 343 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 KRT71Q3SY84 523 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 TPTE2P1Q5T6R2 138 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 PRAMEF5Q5TYX0 476 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 SMARCD3Q6STE5 483 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 CATSPERDQ86XM0 798 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 ABHD12Q8N2K0 398 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 FTMTQ8N4E7 242 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 PROKR2Q8NFJ6 384 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 OR1N2Q8NGR9 330 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 OR56B4Q8NH76 319 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 PRSS3P2Q8NHM4 247 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 TRMT10AQ8TBZ6 339 aaKnown RBP4.98□□□□□ -1.61
LIMA1-204ENST00000549064 FANK1Q8TC84 345 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 URB1-AS1Q96HZ7 61 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 AMELYQ99218 206 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 ABCB9Q9NP78 766 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 RASL12Q9NYN1 266 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 SLC22A13Q9Y226 551 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 DMRT1Q9Y5R6 373 aa4.98□□□□□ -1.61
LIMA1-204ENST00000549064 FAT2Q9NYQ8 4349 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 MAGEA13PA6NCF6 341 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ARRDC5A6NEK1 342 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 LY6LH3BQJ8 138 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF593O00488 134 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ANGPT2O15123 496 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ARPC3O15145 178 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 RGS16O15492 202 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-204ENST00000549064 BRI3O95415 125 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 IFNA14P01570 189 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 GYPBP06028 91 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 FAM106CPP0CH98 169 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 KDELR2P33947 212 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ARHGDIBP52566 201 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ELLP55199 621 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-204ENST00000549064 SNU13P55769 128 aaKnown RBP4.97□□□□□ -1.61
LIMA1-204ENST00000549064 GRB2P62993 217 aaKnown RBP4.97□□□□□ -1.61
LIMA1-204ENST00000549064 SELENOWP63302 87 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF616Q08AN1 781 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 GAGE2BQ13066 116 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 HES1Q14469 280 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 RBM39Q14498 530 aaKnown RBP4.97□□□□□ -1.61
LIMA1-204ENST00000549064 SNCBQ16143 134 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 CEACAM21Q3KPI0 293 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 GAGE2EQ4V326 116 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 C10orf25Q5T742 122 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 RNLSQ5VYX0 342 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 PRR27Q6MZM9 219 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 GAGE2AQ6NT46 116 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 GDPD3Q7L5L3 318 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 SGPP2Q8IWX5 399 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 FAM71E2Q8N5Q1 922 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 OR6Q1Q8NGQ2 317 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 OR52I2Q8NH67 350 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ARPC1AQ92747 370 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 DLX4Q92988 240 aaPredicted RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms