RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	IGHV2-26	A0A0B4J1V2	119 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	SIRPB1	O00241	398 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	SLC33A1	O00400	549 aa	Predicted RBP	6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	GABRP	O00591	440 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	TIMM23	O14925	209 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	MAGEB3	O15480	346 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	ARG1	P05089	322 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	TMEM225B	P0DP42	221 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	ZNF44	P15621	663 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	CAPG	P40121	348 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	DYNLT3	P51808	116 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	SNU13	P55769	128 aa	Known RBP	6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	PPP3R1	P63098	170 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	PAX5	Q02548	391 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	OGFRL1	Q5TC84	451 aa	Predicted RBP	6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	MINOS1	Q5TGZ0	78 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	OR2G6	Q5TZ20	316 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	C11orf88	Q6PI97	169 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440		Q6ZRM9	215 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	RNF144B	Q7Z419	303 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	TRAPPC6B	Q86SZ2	158 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	C8orf59	Q8N0T1	100 aa	Predicted RBP	6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	TPRX1	Q8N7U7	411 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	OR51A2	Q8NGJ7	313 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	OR4C13	Q8NGP0	309 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	MALSU1	Q96EH3	234 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	TMEM80	Q96HE8	168 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	CLEC7A	Q9BXN2	247 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	NPFFR1	Q9GZQ6	430 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	TMEM133	Q9H2Q1	129 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	PPA2	Q9H2U2	334 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	VCX	Q9H320	206 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	TAS2R4	Q9NYW5	299 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	TAS2R3	Q9NYW6	316 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	CNOT2	Q9NZN8	540 aa	Known RBP	6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	SLC45A2	Q9UMX9	530 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440	MINOS1-NBL1	R4GNA1	71 aa		6.2	□□□□□ -1.42
SNHG1-223	ENST00000545440		A0A0G2JK05	382 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	TRBV5-5	A0A0J9YX44	114 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	ODAM	A1E959	279 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	MEX3A	A1L020	520 aa	Known RBP	6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	EFCAB10	A6NFE3	127 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440		M0QZ24	198 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	OGG1	O15527	345 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	CHST1	O43916	411 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	LALBA	P00709	142 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	ALDOB	P05062	364 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	GNAO1	P09471	354 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	CALCB	P10092	127 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	CD34	P28906	385 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	GABRA5	P31644	462 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	SOX2	P48431	317 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	KCNJ3	P48549	501 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	TAS2R43	P59537	309 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	SRSF4	Q08170	494 aa	Known RBP	6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	IL13RA2	Q14627	380 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	YIF1B	Q5BJH7	314 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	DDI2	Q5TDH0	399 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	DMKN	Q6E0U4	476 aa	Predicted RBP	6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	OR52W1	Q6IF63	320 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440		Q6P435	159 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	HEPN1	Q6WQI6	88 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	ASCL4	Q6XD76	172 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440		Q6ZSN1	163 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	LHFPL4	Q7Z7J7	247 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	RTN4RL2	Q86UN3	420 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	OR2C3	Q8N628	320 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	ZNF485	Q8NCK3	441 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440		Q8NFD4	153 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	OR51T1	Q8NGJ9	327 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	TNFAIP8L1	Q8WVP5	186 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	CORO2A	Q92828	525 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	COQ2	Q96H96	371 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	PGLYRP3	Q96LB9	341 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	GPER1	Q99527	375 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	FAM192A	Q9GZU8	254 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	TMEM138	Q9NPI0	162 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	CHCHD3	Q9NX63	227 aa	Known RBP	6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	BABAM2	Q9NXR7	383 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	IL36G	Q9NZH8	169 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	OR6C3	Q9NZP0	311 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440	TCF19	Q9Y242	345 aa		6.19	□□□□□ -1.42
SNHG1-223	ENST00000545440		A0A087X0M5	115 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440		A0A1B0GX30	115 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	ZNF729	A6NN14	1252 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440		H0YJX3	145 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	MYL12B	O14950	172 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	DEGS1	O15121	323 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	TRIAP1	O43715	76 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	IGFBP3	P17936	291 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	PAX6	P26367	422 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	BDKRB2	P30411	391 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	ZNF93	P35789	620 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	PTGFR	P43088	359 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	KIR2DS4	P43632	304 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	OR3A4P	P47883	348 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	GLIPR1	P48060	266 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	EFNB2	P52799	333 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	UCP3	P55916	312 aa		6.18	□□□□□ -1.42
SNHG1-223	ENST00000545440	KRTAP10-3	P60369	221 aa		6.18	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms