RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	PLA2G2E	Q9NZK7	142 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	KIAA1549	Q9HCM3	1950 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	MEX3A	A1L020	520 aa	Known RBP	11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	C7orf77	A4D0Y5	90 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	ADAM20	O43506	726 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	PGLYRP1	O75594	196 aa	Predicted RBP	11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	CNOT4	O95628	575 aa	Known RBP	11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	SP1	P08047	785 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	SCT	P09683	121 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	HOXB1	P14653	301 aa	Predicted RBP	11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	TUBG1	P23258	451 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	AKR1D1	P51857	326 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	TAS2R30	P59541	319 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	TGFBR3	Q03167	851 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	RSPO4	Q2I0M5	234 aa	Predicted RBP	11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	TBC1D28	Q2M2D7	210 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	ACSF3	Q4G176	576 aa	Predicted RBP	11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	LILRB1	Q8NHL6	650 aa	Predicted RBP	11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	FAM213B	Q8TBF2	198 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	MALSU1	Q96EH3	234 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	C14orf79	Q96F83	325 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	ATP5S	Q99766	215 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	TUBG2	Q9NRH3	451 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669	WSB1	Q9Y6I7	421 aa		11.16	□□□□□ -0.62
CPSF7-223	ENST00000544669		A0A096LPE4	126 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669		A0A1W2PPZ6	126 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	RBFOX3	A6NFN3	312 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	FAM24A	A6NFZ4	105 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	IGHV3-9	P01782	118 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	S100A9	P06702	114 aa	Known RBP	11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	ACAA1	P09110	424 aa	Predicted RBP	11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	ZNF44	P15621	663 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	NFYB	P25208	207 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	ATP6V0C	P27449	155 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	POLR2G	P62487	172 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	FBXW9	Q5XUX1	488 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	TMEM182	Q6ZP80	229 aa	Predicted RBP	11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	H1FOO	Q8IZA3	346 aa	Predicted RBP	11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	TMEM251	Q8N6I4	163 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	ZBTB34	Q8NCN2	500 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	CYYR1	Q96J86	154 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	USB1	Q9BQ65	265 aa	Known RBP	11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	ZNF581	Q9P0T4	197 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	ZDHHC8	Q9ULC8	765 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	XIRP2	A4UGR9	3374 aa		11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	RANBP2	P49792	3224 aa	Known RBP	11.15	□□□□□ -0.62
CPSF7-223	ENST00000544669	TRAV1-1	A0A0B4J248	108 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZNF98	A6NK75	572 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	C9orf172	C9J069	976 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	MASP2	O00187	686 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	SSSCA1	O60232	199 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	SCAF4	O95104	1147 aa	Known RBP	11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	F12	P00748	615 aa	Predicted RBP	11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	HSPB1	P04792	205 aa	Known RBP	11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	OR8U8	P0C7N1	319 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	MAS1L	P35410	378 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	MPL	P40238	635 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	MAGEA5	P43359	124 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	SULT1A1	P50225	295 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	AWAT1	Q58HT5	328 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	CDCP2	Q5VXM1	449 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	OR10G4	Q8NGN3	311 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	OR1K1	Q8NGR3	316 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	OR5C1	Q8NGR4	320 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	MRPL30	Q8TCC3	161 aa	Known RBP	11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	WNT2B	Q93097	391 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	SIGLEC12	Q96PQ1	595 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	SCRT1	Q9BWW7	348 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	CCL28	Q9NRJ3	127 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	LIN7C	Q9NUP9	197 aa	Known RBP	11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	PI4KA	P42356	2102 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	IGSF23	A1L1A6	192 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	CXorf65	A6NEN9	183 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	FAM90A26	D6RGX4	464 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	HSD17B6	O14756	317 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	IFNA17	P01571	189 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	HBG1	P69891	147 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	HBG2	P69892	147 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	DAZAP2	Q15038	168 aa	Predicted RBP	11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	PDCD1	Q15116	288 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	GABRA6	Q16445	453 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	ZNF324B	Q6AW86	544 aa	Predicted RBP	11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	OR10V1	Q8NGI7	309 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	RNASE11	Q8TAA1	199 aa	Known RBP	11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	SCGB1C1	Q8TD33	95 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	CD300LF	Q8TDQ1	290 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	SFT2D1	Q8WV19	159 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669	OR51I2	Q9H344	312 aa		11.14	□□□□□ -0.63
CPSF7-223	ENST00000544669		A0A087WWC5	75 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	TMEM210	A6NLX4	147 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669		B4DEV8	164 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669		C9JQL5	133 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	PROB1	E7EW31	1015 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	CHST1	O43916	411 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	SNRNP70	P08621	437 aa	Known RBP	11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	GLI4	P10075	376 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	PRSS12	P56730	875 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	MSMO1	Q15800	293 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	HIKESHI	Q53FT3	197 aa		11.13	□□□□□ -0.63
CPSF7-223	ENST00000544669	KHDC3L	Q587J8	217 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 145.6 ms