RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 KLK3P07288 261 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-208ENST00000543633 MMP7P09237 267 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-208ENST00000543633 EDN3P14138 238 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 S100GP29377 79 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 PNRC1Q12796 327 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-208ENST00000543633 ELOBQ15370 118 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 BRICD5Q6PL45 260 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 SLC25A26Q70HW3 274 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 ODF3L1Q8IXM7 274 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 CMTM1Q8IZ96 169 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 LINC00469Q8N7U9 141 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 CLDND2Q8NHS1 167 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 PLPPR1Q8TBJ4 325 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 ADGRG7Q96K78 797 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 JSRP1Q96MG2 331 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-208ENST00000543633 OPA3Q9H6K4 179 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 RNF150Q9ULK6 438 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 HS3ST3B1Q9Y662 390 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 ASCC3Q8N3C0 2202 aaKnown RBP11.79□□□□□ -0.52
VPS33A-208ENST00000543633 TNRC6AQ8NDV7 1962 aaKnown RBP11.79□□□□□ -0.52
VPS33A-208ENST00000543633 SDK1Q7Z5N4 2213 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 SLC22A20A6NK97 555 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 CDRT15L2A8MXV6 281 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 GLIPR1P48060 266 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 NPBWR2P48146 333 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 CD81P60033 236 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 DLK1P80370 383 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 CEACAM16Q2WEN9 425 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 SPIN3Q5JUX0 258 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 ACER2Q5QJU3 275 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 ZNF818PQ6ZRF7 136 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 STX12Q86Y82 276 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 CALHM1Q8IU99 346 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 AGBL5Q8NDL9 886 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 OR2V1Q8NHB1 315 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 SLAMF9Q96A28 289 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 ALKBH3Q96Q83 286 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-208ENST00000543633 TMEM242Q9NWH2 141 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 OCIAD1Q9NX40 245 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 LIPGQ9Y5X9 500 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 ATP23Q9Y6H3 246 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 FRYLO94915 3013 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 MYO15AQ9UKN7 3530 aa11.79□□□□□ -0.52
VPS33A-208ENST00000543633 NCOR1O75376 2440 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 TRAV20A0A0B4J274 112 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 A0A1B0GU03 582 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 LOC102723971A0A1B0GUV8 181 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 SEC14L6B5MCN3 397 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 IGHEP01854 428 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 S100A2P29034 98 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 TRA2AQ13595 282 aaKnown RBP eCLIP11.78□□□□□ -0.52
VPS33A-208ENST00000543633 CXorf66Q5JRM2 361 aaPredicted RBP11.78□□□□□ -0.52
VPS33A-208ENST00000543633 H1FOOQ8IZA3 346 aaPredicted RBP11.78□□□□□ -0.52
VPS33A-208ENST00000543633 GAPTQ8N292 157 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 SUMF1Q8NBK3 374 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 OR2Y1Q8NGV0 311 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 SAP25Q8TEE9 199 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 RAB40CQ96S21 281 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 GGACTQ9BVM4 153 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 PLK3Q9H4B4 646 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 AKIRIN1Q9H9L7 192 aaPredicted RBP11.78□□□□□ -0.52
VPS33A-208ENST00000543633 P4HTMQ9NXG6 502 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 RNF115Q9Y4L5 304 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 ZDBF2Q9HCK1 2354 aa11.78□□□□□ -0.52
VPS33A-208ENST00000543633 ZNF729A6NN14 1252 aaPredicted RBP11.77□□□□□ -0.52
VPS33A-208ENST00000543633 YKT6O15498 198 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 CYTIPO60759 359 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 KLF7O75840 302 aaPredicted RBP11.77□□□□□ -0.52
VPS33A-208ENST00000543633 COX5BP10606 129 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 NTF4P34130 210 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 RPL23AP62750 156 aaKnown RBP11.77□□□□□ -0.52
VPS33A-208ENST00000543633 PMS2CLQ68D20 193 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 C1orf210Q8IVY1 113 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 CYB561D1Q8N8Q1 229 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 Q8WTZ3 238 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 EDARADDQ8WWZ3 215 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 ABHD14AQ9BUJ0 271 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 LINC00470Q9BZP3 86 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 GAR1Q9NY12 217 aaKnown RBP11.77□□□□□ -0.52
VPS33A-208ENST00000543633 TREM2Q9NZC2 230 aa11.77□□□□□ -0.52
VPS33A-208ENST00000543633 A0A1B0GV50 99 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 H0YL77 283 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 LAMTOR5O43504 91 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 IFNA5P01569 189 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 P04436 131 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 OMGP23515 440 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 ITGA3P26006 1051 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 ASCL1P50553 236 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 HAGHQ16775 308 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 NCMAPQ5T1S8 102 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 MKXQ8IYA7 352 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 TMEM105Q8N8V8 129 aa11.77□□□□□ -0.53
VPS33A-208ENST00000543633 PSMG3Q9BT73 122 aaPredicted RBP11.77□□□□□ -0.53
VPS33A-208ENST00000543633 REPIN1Q9BWE0 567 aaKnown RBP11.77□□□□□ -0.53
VPS33A-208ENST00000543633 PARD6GQ9BYG4 376 aaPredicted RBP11.77□□□□□ -0.53
VPS33A-208ENST00000543633 SHANK1Q9Y566 2161 aa11.76□□□□□ -0.53
VPS33A-208ENST00000543633 MED19A0JLT2 244 aaPredicted RBP11.76□□□□□ -0.53
VPS33A-208ENST00000543633 CXCL13O43927 109 aa11.76□□□□□ -0.53
VPS33A-208ENST00000543633 TMEM50AO95807 157 aa11.76□□□□□ -0.53
VPS33A-208ENST00000543633 BCL3P20749 454 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms