RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DUX4L7P0CJ90 424 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 SWI5Q1ZZU3 235 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 ZFP62Q8NB50 900 aaPredicted RBP14.43□□□□□ -0.1
USP28-208ENST00000540438 ASB13Q8WXK3 278 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 APOBEC3DQ96AK3 386 aaPredicted RBP14.43□□□□□ -0.1
USP28-208ENST00000540438 DDA1Q9BW61 102 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 FAM86C1Q9NVL1 165 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 DUX4Q9UBX2 424 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 FGF16O43320 207 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 CEACAM21Q3KPI0 293 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 MIDNQ504T8 468 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 C10orf35Q96D05 121 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 IER2Q9BTL4 223 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 A0A0G2JRQ6 117 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 ANKRD30BLA7E2S9 258 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 HSPA12AO43301 675 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 TK1P04183 234 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 SFTA3P0C7M3 94 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 PET100P0DJ07 73 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 FABP6P51161 128 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 AKR1D1P51857 326 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 ISOC2Q96AB3 205 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 MOB3AQ96BX8 217 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 PHYHIPLQ96FC7 376 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 EIF5A2Q9GZV4 153 aaKnown RBP14.42□□□□□ -0.1
USP28-208ENST00000540438 PRDM14Q9GZV8 571 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 KCNS2Q9ULS6 477 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 KLRC4-KLRK1H3BQV0 150 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 DPPA2Q7Z7J5 298 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 OR1K1Q8NGR3 316 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 RNASE11Q8TAA1 199 aaKnown RBP14.42□□□□□ -0.1
USP28-208ENST00000540438 STOML3Q8TAV4 291 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 MSL2Q9HCI7 577 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 TMEM9BQ9NQ34 198 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 EDARQ9UNE0 448 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 IGF2RP11717 2491 aa14.42□□□□□ -0.1
USP28-208ENST00000540438 TRAV24A0A0B4J272 114 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 RPL36A-HNRNPH2H7BZ11 118 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 WDR1O75083 606 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 KRTAP27-1Q3LI81 207 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 VWA1Q6PCB0 445 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 COLCA1Q6ZS62 124 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 WDR86Q86TI4 376 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 FAM213BQ8TBF2 198 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 WRBO00258 174 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 TMEM50AO95807 157 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 OR13C7P0DN81 318 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 CD46P15529 392 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 DTYMKP23919 212 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 PPP1CCP36873 323 aaKnown RBP14.41□□□□□ -0.1
USP28-208ENST00000540438 SYT3Q9BQG1 590 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 GPR87Q9BY21 358 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 PRELID1Q9Y255 219 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 FBP1P09467 338 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 PJVKQ0ZLH3 352 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 FOXF2Q12947 444 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 ARL6IP1Q15041 203 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 Q6ZSR3 168 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 WDYHV1Q96HA8 205 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 ZPBPQ9BS86 351 aa14.41□□□□□ -0.1
USP28-208ENST00000540438 IGKV3D-15A0A087WSY6 115 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 RNASEK-C17orf49H0YIS7 233 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 RRP8O43159 456 aaKnown RBP14.4□□□□□ -0.1
USP28-208ENST00000540438 IAPPP10997 89 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 SURF2Q15527 256 aaPredicted RBP14.4□□□□□ -0.1
USP28-208ENST00000540438 ASCL4Q6XD76 172 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 LGI3Q8N145 548 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 DMBX1Q8NFW5 382 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 RFESDQ8TAC1 157 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 RGCCQ9H4X1 137 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 Q9N2K0 584 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 A6NLC8 198 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 ST8SIA3O43173 380 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 PSG2P11465 335 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 CAMLGP49069 296 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 FGF12P61328 243 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 ZNF154Q13106 437 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 EIF4E3Q8N5X7 224 aaKnown RBP14.4□□□□□ -0.1
USP28-208ENST00000540438 SPSB4Q96A44 273 aa14.4□□□□□ -0.1
USP28-208ENST00000540438 ZGRF1Q86YA3 2104 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 IGSF23A1L1A6 192 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 DEFB108AA8MXU0 73 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 SLC34A2O95436 690 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 MPV17P39210 176 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 RPL35P42766 123 aaKnown RBP14.39□□□□□ -0.11
USP28-208ENST00000540438 CCL20P78556 96 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 TMEM267Q0VDI3 215 aaPredicted RBP14.39□□□□□ -0.11
USP28-208ENST00000540438 CCDC36Q8IYA8 594 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 FAM58AQ8N1B3 248 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 ZNF808Q8N4W9 903 aaPredicted RBP14.39□□□□□ -0.11
USP28-208ENST00000540438 LILRB1Q8NHL6 650 aaPredicted RBP14.39□□□□□ -0.11
USP28-208ENST00000540438 PLPPR1Q8TBJ4 325 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 RARRES2Q99969 163 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 COL27A1Q8IZC6 1860 aaPredicted RBP14.39□□□□□ -0.11
USP28-208ENST00000540438 IGHV3-43A0A0B4J1X8 118 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 DEGS1O15121 323 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 TSPAN9O75954 239 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 TSPAN15O95858 294 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 CST4P01036 141 aa14.39□□□□□ -0.11
USP28-208ENST00000540438 GLAP06280 429 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms