RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 HMGCS1Q01581 520 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SSBP1Q04837 148 aaKnown RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 PNRC1Q12796 327 aaPredicted RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 ENDOGQ14249 297 aaKnown RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 TAF13Q15543 124 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 MMDQ15546 238 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 EXT1Q16394 746 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 LTC4SQ16873 150 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 ZNF699Q32M78 642 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 CEACAM21Q3KPI0 293 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 LINC00303Q3SY05 128 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 TMEM176BQ3YBM2 270 aaPredicted RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 ZNF658BQ4V348 819 aaPredicted RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 TMEM41BQ5BJD5 291 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 LRRC10Q5BKY1 277 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 GCSAMLQ5JQS6 135 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SOHLH1Q5JUK2 328 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 UBE2NLQ5JXB2 153 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 C1orf220Q5T0J3 134 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 C12orf73Q69YU5 71 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 TXNRD3NBQ6F5E7 133 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SFXN4Q6P4A7 337 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 INO80CQ6PI98 192 aaPredicted RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 TMEM220Q6QAJ8 160 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 FRRS1Q6ZNA5 592 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 Q6ZPB1 254 aaPredicted RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 GTF2H5Q6ZYL4 71 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SMIM5Q71RC9 77 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 MARCH9Q86YJ5 346 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 TGIF2LYQ8IUE0 185 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 C11orf53Q8IXP5 236 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 UBALD2Q8IYN6 164 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 BOD1L2Q8IYS8 172 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 RNF175Q8N4F7 328 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SLC5A8Q8N695 610 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 TCTEX1D1Q8N7M0 179 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 TCEANCQ8N8B7 351 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 FER1L6-AS1Q8NA97 138 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 ZSCAN4Q8NAM6 433 aaPredicted RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 CHST4Q8NCG5 386 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR2Z1Q8NG97 314 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR10G2Q8NGC3 310 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR4K17Q8NGC6 315 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR4K1Q8NGD4 311 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR52I1Q8NGK6 324 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR2Y1Q8NGV0 311 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR10X1Q8NGY0 326 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR6K2Q8NGY2 324 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR6N1Q8NGY5 312 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR52E5Q8NH55 327 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 GEMIN6Q8WXD5 167 aaKnown RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 TMEM45BQ96B21 275 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SLAMF6Q96DU3 332 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 TVP23CQ96ET8 276 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 BTF3L4Q96K17 158 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SLC35G5Q96KT7 338 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 ZFP3Q96NJ6 502 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 MCEEQ96PE7 176 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 MS4A10Q96PG2 267 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 ZNF607Q96SK3 696 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 NKX3-1Q99801 234 aaPredicted RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 ZNF649Q9BS31 505 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 CHRDL1Q9BU40 450 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SCRT1Q9BWW7 348 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 PHF7Q9BWX1 381 aaPredicted RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 LINC00470Q9BZP3 86 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SLC39A8Q9C0K1 460 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR11A1Q9GZK7 315 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 OR52D1Q9H346 318 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 GEMIN7Q9H840 131 aaKnown RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 TBC1D17Q9HA65 648 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 PELI2Q9HAT8 420 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 RAB18Q9NP72 206 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 TMEM9BQ9NQ34 198 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 CYTL1Q9NRR1 136 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 ZNF586Q9NXT0 402 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 P2RX2Q9UBL9 471 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 PEMTQ9UBM1 199 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 ZNF391Q9UJN7 358 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 FUT9Q9Y231 359 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 RASD1Q9Y272 281 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 SIGLEC7Q9Y286 467 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 NTNG1Q9Y2I2 539 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 YARS2Q9Y2Z4 477 aaKnown RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 STRAPQ9Y3F4 350 aaKnown RBP2.1□□□□□ -2.07
SKA3-207ENST00000536239 LOXL2Q9Y4K0 774 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 MEGF6O75095 1541 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 DSPPQ9NZW4 1301 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 PIKFYVEQ9Y2I7 2098 aa2.1□□□□□ -2.07
SKA3-207ENST00000536239 NUP210LQ5VU65 1888 aa2.09□□□□□ -2.07
SKA3-207ENST00000536239 NYNRINQ9P2P1 1898 aaKnown RBP2.09□□□□□ -2.07
SKA3-207ENST00000536239 TNRC6CQ9HCJ0 1690 aaKnown RBP2.09□□□□□ -2.07
SKA3-207ENST00000536239 ADAMTS7Q9UKP4 1686 aa2.09□□□□□ -2.07
SKA3-207ENST00000536239 MYLKQ15746 1914 aa2.09□□□□□ -2.07
SKA3-207ENST00000536239 WDR90Q96KV7 1748 aa2.09□□□□□ -2.07
SKA3-207ENST00000536239 TRAV1-2A0A0B4J238 106 aa2.09□□□□□ -2.07
SKA3-207ENST00000536239 TRBV2A0A0J9YWF9 115 aa2.09□□□□□ -2.07
SKA3-207ENST00000536239 A0A1W2PR80 420 aa2.09□□□□□ -2.07
SKA3-207ENST00000536239 IGLC7A0M8Q6 106 aa2.09□□□□□ -2.07
SKA3-207ENST00000536239 SMIM30A4D0T7 59 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms