RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 URB1O60287 2271 aaKnown RBP11.27□□□□□ -0.61
LDLR-203ENST00000535915 MED12LQ86YW9 2145 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 C9JQL5 133 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 SS18L1O75177 396 aaPredicted RBP11.26□□□□□ -0.61
LDLR-203ENST00000535915 CDS2O95674 445 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 RAB5BP61020 215 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 HERPUD1Q15011 391 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 SRSF7Q16629 238 aaKnown RBP eCLIP11.26□□□□□ -0.61
LDLR-203ENST00000535915 GAPTQ8N292 157 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 HSD17B11Q8NBQ5 300 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 LYPD6BQ8NI32 183 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 SH3BGRL3Q9H299 93 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 IL17BQ9UHF5 180 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 PRSS50Q9UI38 385 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 KIR2DS1A0A191URI9 304 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 ANKRD30BLA7E2S9 258 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 HSD17B6O14756 317 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 PRH1P02810 166 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 SP1P08047 785 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 DANCRP0C864 163 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 APLNRP35414 380 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 KIR2DS4P43632 304 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 CAMLGP49069 296 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 ASCL1P50553 236 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 SSTP61278 116 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 KIR2DS1Q14954 304 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 AKR1E2Q96JD6 320 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 ZNF488Q96MN9 340 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 LUZP4Q9P127 313 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 LHX6Q9UPM6 363 aa11.26□□□□□ -0.61
LDLR-203ENST00000535915 IGKV1D-13A0A0B4J2D9 117 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 SLC22A20A6NK97 555 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 IGKV1-13P0DP09 117 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 CD59P13987 128 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 PTAFRP25105 342 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 NKX2-1P43699 371 aaPredicted RBP11.25□□□□□ -0.61
LDLR-203ENST00000535915 FHITP49789 147 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 HIKESHIQ53FT3 197 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 BOD1Q96IK1 185 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 ATP23Q9Y6H3 246 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 HS3ST1O14792 307 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 LILRA1O75019 489 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 PPT1P50897 306 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 EWSR1Q01844 656 aaKnown RBP eCLIP11.25□□□□□ -0.616e-6■■■■□ 22.1
LDLR-203ENST00000535915 SELENOHQ8IZQ5 122 aaKnown RBP11.25□□□□□ -0.61
LDLR-203ENST00000535915 OR2C3Q8N628 320 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 SUMF2Q8NBJ7 301 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 OR5P3Q8WZ94 311 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 TMEM56Q96MV1 263 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 SPIN2AQ99865 258 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 SPIN2BQ9BPZ2 258 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 OPA3Q9H6K4 179 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 KLF13Q9Y2Y9 288 aaPredicted RBP11.25□□□□□ -0.61
LDLR-203ENST00000535915 LIPGQ9Y5X9 500 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 TMEM56-RWDD3S4R434 201 aa11.25□□□□□ -0.61
LDLR-203ENST00000535915 MEX3AA1L020 520 aaKnown RBP11.24□□□□□ -0.61
LDLR-203ENST00000535915 FAM24AA6NFZ4 105 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 FAM157AC9JC47 383 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 KLRC4-KLRK1H3BQV0 150 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 WRBO00258 174 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 C1QL1O75973 258 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 MT-CO3P00414 261 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 SP9P0CG40 484 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 SNCAP37840 140 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 RND3P61587 244 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 CLN3Q13286 438 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 Q3ZCU0 254 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 AKIRIN2Q53H80 203 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 CCL28Q9NRJ3 127 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 BDP1A6H8Y1 2624 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 IGKV1-6A0A0C4DH72 117 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 ADAM20O43506 726 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 SLC34A2O95436 690 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 CTXN2P0C2S0 81 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 WNT5AP41221 380 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 SLC10A1Q14973 349 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 ZNF573Q86YE8 665 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 RDH5Q92781 318 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 EIF5A2Q9GZV4 153 aaKnown RBP11.24□□□□□ -0.61
LDLR-203ENST00000535915 DEFB127Q9H1M4 99 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 PLK3Q9H4B4 646 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 SPACA1Q9HBV2 294 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 C19orf12Q9NSK7 152 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 CACFD1Q9UGQ2 172 aa11.24□□□□□ -0.61
LDLR-203ENST00000535915 TNFSF12O43508 249 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 SSSCA1O60232 199 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 TUSC2O75896 110 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 GNG3P63215 75 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 CLINT1Q14677 625 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 DHRS13Q6UX07 377 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.23□□□□□ -0.61
LDLR-203ENST00000535915 CMTM1Q8IZ96 169 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 C17orf78Q8N4C9 275 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 MAGT1Q9H0U3 335 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 MPC1Q9Y5U8 109 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 C3orf80F5H4A9 247 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 TNFSF15O95150 251 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 OMGP23515 440 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 GUK1Q16774 197 aa11.23□□□□□ -0.61
LDLR-203ENST00000535915 SPATA46Q5T0L3 261 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms