RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CUL9Q8IWT3 2517 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 COL4A5P29400 1685 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 SIPA1L3O60292 1781 aaPredicted RBP2.49□□□□□ -2.01
CD44-223ENST00000526553 LAMB2P55268 1798 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 AK9Q5TCS8 1911 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 TMEM213A2RRL7 107 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 C9JQL5 133 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 F8VZ95 297 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 CLDN34H7C241 214 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 CDIPTO14735 213 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 FABP7O15540 132 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 SLC37A4O43826 429 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 IGKV1D-16P01601 117 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 RLN2P04090 185 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 CDK1P06493 297 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 NELFEP18615 380 aaKnown RBP2.49□□□□□ -2.01
CD44-223ENST00000526553 TAC1P20366 129 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 PSMB9P28065 219 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 MPIP34949 423 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 UGT2B10P36537 528 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 TUFMP49411 452 aaKnown RBP2.49□□□□□ -2.01
CD44-223ENST00000526553 TAS2R43P59537 309 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 CDC20Q12834 499 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 DMC1Q14565 340 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 ZBTB6Q15916 424 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 TMEM249Q2WGJ8 235 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 COX19Q49B96 90 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 MORN3Q6PF18 240 aaPredicted RBP2.49□□□□□ -2.01
CD44-223ENST00000526553 SHISA6Q6ZSJ9 500 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 FAM231DQ6ZW35 169 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 CYP4Z2PQ8N1L4 340 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 OR2Z1Q8NG97 314 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 UBA3Q8TBC4 463 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 PPWD1Q96BP3 646 aaKnown RBP2.49□□□□□ -2.01
CD44-223ENST00000526553 ZMYND19Q96E35 227 aaPredicted RBP2.49□□□□□ -2.01
CD44-223ENST00000526553 NEURL3Q96EH8 262 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 HBEGFQ99075 208 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 LHX5Q9H2C1 402 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 DSN1Q9H410 356 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 PARP11Q9NR21 331 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 RBM22Q9NW64 420 aaKnown RBP eCLIP2.49□□□□□ -2.01
CD44-223ENST00000526553 MS4A12Q9NXJ0 267 aa2.49□□□□□ -2.01
CD44-223ENST00000526553 STX18Q9P2W9 335 aaKnown RBP2.49□□□□□ -2.01
CD44-223ENST00000526553 RBBP6Q7Z6E9 1792 aaKnown RBP2.49□□□□□ -2.01
CD44-223ENST00000526553 SPEF2Q9C093 1822 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 IGKV1D-17A0A075B6S4 117 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 A0A1W2PRG6 482 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 C7orf66A4D0T2 115 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 ZNF233A6NK53 670 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 ZNF850A8MQ14 1090 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 MKRN2OSH3BPM6 223 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 SHOX2O60902 331 aaPredicted RBP2.48□□□□□ -2.01
CD44-223ENST00000526553 MYO1DO94832 1006 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 IGLV3-19P01714 112 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 IL4P05112 153 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 SYT1P21579 422 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 KDELR2P33947 212 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 CRATP43155 626 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 MAGEA6P43360 314 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 GCLMP48507 274 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 PITPNAQ00169 270 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 BAXQ07812 192 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 SLAMF1Q13291 335 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 BTN1A1Q13410 526 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 TPBGQ13641 420 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 CEACAM21Q3KPI0 293 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 CLLU1OSQ5K130 101 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 RBM48Q5RL73 367 aaKnown RBP2.48□□□□□ -2.01
CD44-223ENST00000526553 KCTD16Q68DU8 428 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 UNQ9165/PRO28630Q6UXU0 137 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 CRLF3Q8IUI8 442 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 IQCF2Q8IXL9 164 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 SELENOHQ8IZQ5 122 aaKnown RBP2.48□□□□□ -2.01
CD44-223ENST00000526553 ZNF709Q8N972 641 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 SPANXA2-OT1Q8N9U9 137 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 SLC26A10Q8NG04 563 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 OR7G1Q8NGA0 311 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 OR52N1Q8NH53 320 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 BLNKQ8WV28 456 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 RTN4IP1Q8WWV3 396 aaPredicted RBP2.48□□□□□ -2.01
CD44-223ENST00000526553 BIRC8Q96P09 236 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 ZSCAN16Q9H4T2 348 aaPredicted RBP2.48□□□□□ -2.01
CD44-223ENST00000526553 IFT46Q9NQC8 304 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 SIRT7Q9NRC8 400 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 TAS2R5Q9NYW4 299 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 INSIG2Q9Y5U4 225 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 URGCP-MRPS24S4R325 110 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 MYO9BQ13459 2157 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 CENPFP49454 3210 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 ANKRD36CQ5JPF3 1778 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 DDX60Q8IY21 1712 aaKnown RBP2.48□□□□□ -2.01
CD44-223ENST00000526553 MKI67P46013 3256 aaKnown RBP2.48□□□□□ -2.01
CD44-223ENST00000526553 ABCC12Q96J65 1359 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 CABIN1Q9Y6J0 2220 aa2.48□□□□□ -2.01
CD44-223ENST00000526553 NRCAMQ92823 1304 aa2.47□□□□□ -2.01
CD44-223ENST00000526553 SCN9AQ15858 1988 aa2.47□□□□□ -2.01
CD44-223ENST00000526553 MRC1P22897 1456 aa2.47□□□□□ -2.01
CD44-223ENST00000526553 A0A0C4DFX4 3053 aa2.47□□□□□ -2.01
CD44-223ENST00000526553 LAMB4A4D0S4 1761 aa2.47□□□□□ -2.01
CD44-223ENST00000526553 DLG5Q8TDM6 1919 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms