RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MEF2CQ06413 473 aaPredicted RBP8.3□□□□□ -1.08
VPS28-204ENST00000526054 ATXN7L3Q14CW9 347 aaPredicted RBP8.3□□□□□ -1.08
VPS28-204ENST00000526054 PDCD1Q15116 288 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 P2RY14Q15391 338 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 TAF9Q16594 264 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 ATAD3CQ5T2N8 411 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 BRICD5Q6PL45 260 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 Q6YL49 198 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 OR2W3Q7Z3T1 314 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 TPRA1Q86W33 373 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 TMEM86BQ8N661 226 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 TMEM104Q8NE00 496 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 KCNG3Q8TAE7 436 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 SSMEM1Q8WWF3 244 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 FAM46BQ96A09 425 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 TBX15Q96SF7 602 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 TMEM59Q9BXS4 323 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 SELENOIQ9C0D9 397 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 NAA50Q9GZZ1 169 aaKnown RBP8.3□□□□□ -1.08
VPS28-204ENST00000526054 BANF2Q9H503 90 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 C1RLQ9NZP8 487 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 STEAP1Q9UHE8 339 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 POMT1Q9Y6A1 747 aa8.3□□□□□ -1.08
VPS28-204ENST00000526054 KIAA2026Q5HYC2 2103 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 TRGV10A0A0A0MS01 117 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 CENPVL3A0A0U1RRI6 287 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 SHISA3A0PJX4 238 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 IFITM5A6NNB3 132 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 NDUFA7O95182 113 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 VSIG8P0DPA2 414 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 MMP9P14780 707 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 OR10A3P58181 314 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 RELBQ01201 579 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 SRSF4Q08170 494 aaKnown RBP8.29□□□□□ -1.08
VPS28-204ENST00000526054 RBM39Q14498 530 aaKnown RBP8.29□□□□□ -1.08
VPS28-204ENST00000526054 ZNF273Q14593 569 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 CTF1Q16619 201 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 KRBOX4Q5JUW0 171 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 HES5Q5TA89 166 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 OLFML2AQ68BL7 652 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 NCR3LG1Q68D85 454 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 TMEM200BQ69YZ2 307 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 C1orf122Q6ZSJ8 110 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 VMO1Q7Z5L0 202 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 TRAPPC6BQ86SZ2 158 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 SUMF2Q8NBJ7 301 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 NEK7Q8TDX7 302 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 FAM3DQ96BQ1 224 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 Q96M66 194 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 URM1Q9BTM9 101 aaKnown RBP8.29□□□□□ -1.08
VPS28-204ENST00000526054 DPCDQ9BVM2 203 aaPredicted RBP8.29□□□□□ -1.08
VPS28-204ENST00000526054 BARHL1Q9BZE3 327 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 METTL8Q9H825 291 aaKnown RBP8.29□□□□□ -1.08
VPS28-204ENST00000526054 LINC00312Q9Y6C7 94 aa8.29□□□□□ -1.08
VPS28-204ENST00000526054 IGHV1-69DA0A0B4J2H0 117 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 ODAMA1E959 279 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 CLPSL1A2RUU4 121 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 NOTOA8MTQ0 251 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 TMEM14DPA8MWL7 114 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 MCRIP1C9JLW8 97 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 M0QZ24 198 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 AIPO00170 330 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 IGHV1-69P01742 117 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 ZNF728P0DKX0 622 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 CCL3L1P16619 93 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 CLDN12P56749 244 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 RPL15P61313 204 aaKnown RBP8.28□□□□□ -1.08
VPS28-204ENST00000526054 NCS1P62166 190 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 LSM3P62310 102 aaKnown RBP8.28□□□□□ -1.08
VPS28-204ENST00000526054 RPS27AP62979 156 aaKnown RBP8.28□□□□□ -1.08
VPS28-204ENST00000526054 GUCA2AQ02747 115 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 AESQ08117 197 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 UNC119Q13432 240 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 FAM189A2Q15884 450 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 CNPY1Q3B7I2 92 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 OR10K2Q6IF99 312 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 RAB12Q6IQ22 244 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 TPRX1Q8N7U7 411 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 OR51D1Q8NGF3 324 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 DYRK2Q92630 601 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 LHX4Q969G2 390 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 COQ2Q96H96 371 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 ZNF714Q96N38 554 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 NEDD4LQ96PU5 975 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 CITED1Q99966 193 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 CENPOQ9BU64 300 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 TM2D1Q9BX74 207 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 GAL3ST2Q9H3Q3 398 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 KCNK15Q9H427 330 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 NCOR1P1Q9H4R4 102 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 SIRT7Q9NRC8 400 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 ING3Q9NXR8 418 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 OR6C3Q9NZP0 311 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 RCC2Q9P258 522 aaKnown RBP8.28□□□□□ -1.08
VPS28-204ENST00000526054 FBLN5Q9UBX5 448 aa8.28□□□□□ -1.08
VPS28-204ENST00000526054 UBE2J1Q9Y385 318 aaPredicted RBP8.28□□□□□ -1.08
VPS28-204ENST00000526054 MEIKINA0A087WXM9 373 aa8.27□□□□□ -1.09
VPS28-204ENST00000526054 A0A0U1RQK1 487 aa8.27□□□□□ -1.09
VPS28-204ENST00000526054 TMEM30CPA0ZSE6 113 aa8.27□□□□□ -1.09
VPS28-204ENST00000526054 SMIM30A4D0T7 59 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms