RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CNTFRP26992 372 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 S100A2P29034 98 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 ENDOGQ14249 297 aaKnown RBP4.07□□□□□ -1.76
NUP54-215ENST00000514313 ZNF561Q8N587 486 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 OR4C13Q8NGP0 309 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 MAL2Q969L2 176 aa4.07□□□□□ -1.76
NUP54-215ENST00000514313 RAB3GAP2Q9H2M9 1393 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 IGHV3-21A0A0B4J1V1 117 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 ASS1P00966 412 aaKnown RBP4.06□□□□□ -1.76
NUP54-215ENST00000514313 TRGV3P03979 118 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 PTHLHP12272 177 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 TGFBR2P37173 567 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 ACTR1BP42025 376 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 TMEM136Q6ZRR5 245 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 OR4P4Q8NGL7 312 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 DDI1Q8WTU0 396 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 CLDN23Q96B33 292 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 UGT2B28Q9BY64 529 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 TXNIPQ9H3M7 391 aa4.06□□□□□ -1.76
NUP54-215ENST00000514313 A0A1W2PQ67 120 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 GOLGA6L4A6NEF3 574 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 F5H5P2 479 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 TMEM250H0YL14 139 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 CYTH3O43739 400 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 IGHG2P01859 326 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 GRPRP30550 384 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 RCVRNP35243 200 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 EMP2P54851 167 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 MP68P56378 58 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 RAB2AP61019 212 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 SDHAF4Q5VUM1 108 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 PLCZ1Q86YW0 608 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 OR11L1Q8NGX0 322 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 DNAJB3Q8WWF6 145 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 REEP6Q96HR9 211 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 SHANK2-AS3Q9BTD1 123 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 ZNF426Q9BUY5 554 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 ZNF586Q9NXT0 402 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 PSMD13Q9UNM6 376 aa4.05□□□□□ -1.76
NUP54-215ENST00000514313 FTCDNL1E5RQL4 147 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 K7ERS5 55 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 LIN7AO14910 233 aaPredicted RBP4.04□□□□□ -1.76
NUP54-215ENST00000514313 ATP6V1G2O95670 118 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 CGB3P0DN86 165 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 CGB7P0DN87 165 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 MLNP12872 115 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 RPL14P50914 215 aaKnown RBP4.04□□□□□ -1.76
NUP54-215ENST00000514313 LDLRAD2Q5SZI1 272 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 OR1P1Q8NH06 330 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 DTD1Q8TEA8 209 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 TSSK6Q9BXA6 273 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 ATRNO75882 1429 aa4.04□□□□□ -1.76
NUP54-215ENST00000514313 IGKV1OR2-108A0A075B7D4 117 aa4.03□□□□□ -1.76
NUP54-215ENST00000514313 OR6C70A6NIJ9 312 aa4.03□□□□□ -1.76
NUP54-215ENST00000514313 COCHO43405 550 aa4.03□□□□□ -1.76
NUP54-215ENST00000514313 ATP8B1O43520 1251 aa4.03□□□□□ -1.76
NUP54-215ENST00000514313 POP7O75817 140 aaKnown RBP4.03□□□□□ -1.76
NUP54-215ENST00000514313 PFN1P07737 140 aaKnown RBP4.03□□□□□ -1.76
NUP54-215ENST00000514313 GABRA1P14867 456 aa4.03□□□□□ -1.76
NUP54-215ENST00000514313 HSPA13P48723 471 aa4.03□□□□□ -1.76
NUP54-215ENST00000514313 CLDN12P56749 244 aa4.03□□□□□ -1.76
NUP54-215ENST00000514313 MTERF4Q7Z6M4 381 aaKnown RBP4.03□□□□□ -1.76
NUP54-215ENST00000514313 SLC13A5Q86YT5 568 aaPredicted RBP4.03□□□□□ -1.76
NUP54-215ENST00000514313 THADAQ6YHU6 1953 aa4.03□□□□□ -1.76
NUP54-215ENST00000514313 SPRR5A0A1B0GTR4 108 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 ZNF729A6NN14 1252 aaPredicted RBP4.02□□□□□ -1.77
NUP54-215ENST00000514313 LEUTXA8MZ59 168 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 PSIP1O75475 530 aaKnown RBP4.02□□□□□ -1.77
NUP54-215ENST00000514313 F8A1P23610 371 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 C4orf26Q17RF5 130 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 HSP90B2PQ58FF3 399 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 TTC33Q6PID6 262 aaPredicted RBP4.02□□□□□ -1.77
NUP54-215ENST00000514313 DRAM2Q6UX65 266 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 ADM2Q7Z4H4 148 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 RBP7Q96R05 134 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 CHST5Q9GZS9 411 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 ICOSQ9Y6W8 199 aa4.02□□□□□ -1.77
NUP54-215ENST00000514313 NUP153P49790 1475 aaKnown RBP4.02□□□□□ -1.77
NUP54-215ENST00000514313 A8MWP4 228 aa4.01□□□□□ -1.77
NUP54-215ENST00000514313 SLC31A1O15431 190 aa4.01□□□□□ -1.77
NUP54-215ENST00000514313 HLA-AP01891 365 aaKnown RBP4.01□□□□□ -1.77
NUP54-215ENST00000514313 SKP2Q13309 424 aa4.01□□□□□ -1.77
NUP54-215ENST00000514313 PAFAH1B3Q15102 231 aaKnown RBP4.01□□□□□ -1.77
NUP54-215ENST00000514313 PRR9Q5T870 116 aa4.01□□□□□ -1.77
NUP54-215ENST00000514313 RIBC1Q8N443 379 aaPredicted RBP4.01□□□□□ -1.77
NUP54-215ENST00000514313 GABARAPL1Q9H0R8 117 aa4.01□□□□□ -1.77
NUP54-215ENST00000514313 TRIM45Q9H8W5 580 aaPredicted RBP4.01□□□□□ -1.77
NUP54-215ENST00000514313 ZNF492Q9P255 531 aa4.01□□□□□ -1.77
NUP54-215ENST00000514313 MYO15BQ96JP2 1530 aa4□□□□□ -1.77
NUP54-215ENST00000514313 BAZ1BQ9UIG0 1483 aaKnown RBP4□□□□□ -1.77
NUP54-215ENST00000514313 IGKV1D-33P01593 117 aa4□□□□□ -1.77
NUP54-215ENST00000514313 IGKV1-33P01594 117 aa4□□□□□ -1.77
NUP54-215ENST00000514313 CD34P28906 385 aa4□□□□□ -1.77
NUP54-215ENST00000514313 EVI2BP34910 448 aa4□□□□□ -1.77
NUP54-215ENST00000514313 GTF2BQ00403 316 aa4□□□□□ -1.77
NUP54-215ENST00000514313 IL15RAQ13261 267 aa4□□□□□ -1.77
NUP54-215ENST00000514313 TBC1D28Q2M2D7 210 aa4□□□□□ -1.77
NUP54-215ENST00000514313 DNAL1Q4LDG9 190 aa4□□□□□ -1.77
NUP54-215ENST00000514313 CENPWQ5EE01 88 aa4□□□□□ -1.77
NUP54-215ENST00000514313 ZNF680Q8NEM1 530 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms