RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	KDELR2	P33947	212 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	SAA4	P35542	130 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	RPL4	P36578	427 aa	Known RBP	3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	CDKN2A	P42771	156 aa	Known RBP	3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	EFNB2	P52799	333 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	LINC00205	P59089	165 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	SELENOW	P63302	87 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	CSNK2B	P67870	215 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	PRB3	Q04118	309 aa	Predicted RBP	3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	DGCR6	Q14129	220 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	RCN1	Q15293	331 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	TAF13	Q15543	124 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	ZBED5	Q49AG3	693 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	LINC01620	Q4KN68	170 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	KLHL12	Q53G59	568 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	GLYATL3	Q5SZD4	288 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	LCN1P1	Q5VSP4	162 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	TEX36	Q5VZQ5	186 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	STUM	Q69YW2	141 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	HCP5	Q6MZN7	132 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	TBPL2	Q6SJ96	375 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	C16orf82	Q7Z2V1	217 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	VMO1	Q7Z5L0	202 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	CDH26	Q8IXH8	852 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	C10orf67	Q8IYJ2	551 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	OR6V1	Q8N148	313 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	PNKD	Q8N490	385 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	FAM216B	Q8N7L0	139 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981		Q8N7P7	452 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	TCEANC	Q8N8B7	351 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	LY6G5B	Q8NDX9	201 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	OR56B2P	Q8NGI1	322 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	OR2AE1	Q8NHA4	323 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	C8orf46	Q8TAG6	207 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	SUN5	Q8TC36	379 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	TMEM37	Q8WXS4	190 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	TNFRSF14	Q92956	283 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	LHX4	Q969G2	390 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	PPP1R14B	Q96C90	147 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	RCN3	Q96D15	328 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	TPD52L3	Q96J77	140 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	ATP6V1G3	Q96LB4	118 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	RBP7	Q96R05	134 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	ATF6B	Q99941	703 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	SIKE1	Q9BRV8	207 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	FGF23	Q9GZV9	251 aa	Predicted RBP	3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	FAM107B	Q9H098	131 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	TLNRD1	Q9H1K6	362 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	SAR1A	Q9NR31	198 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	UFSP2	Q9NUQ7	469 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	MRPL22	Q9NWU5	206 aa	Known RBP	3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	CMTM6	Q9NX76	183 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	CYB5R1	Q9UHQ9	305 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	RPUSD1	Q9UJJ7	312 aa	Known RBP	3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	MRPS7	Q9Y2R9	242 aa	Known RBP	3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	POLR1D	Q9Y2S0	133 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	KPTN	Q9Y664	436 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	COMMD3-BMI1	R4GMX3	469 aa		3.38	□□□□□ -1.87
VPS52-222	ENST00000495981	IGHV3OR15-7	A0A075B7D8	119 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981		A0A0G2JND7	137 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	hCG_38984	A0A1B0GV85	526 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981		A0A1B0GVI7	797 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	XKRY2	A2RUG3	117 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	MSGN1	A6NI15	193 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	CD300LB	A8K4G0	201 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981		M0R135	149 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	XKRY	O14609	159 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	NPFF	O15130	113 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	KHDRBS3	O75525	346 aa	Known RBP	3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	LHB	P01229	141 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	IFNA14	P01570	189 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	GYPA	P02724	150 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	HIST1H1C	P16403	213 aa	Known RBP	3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	RPS27	P42677	84 aa	Known RBP	3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	HERV-K104	P61576	105 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	ZNF92	Q03936	586 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	KLF5	Q13887	457 aa	Predicted RBP	3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	CYLC2	Q14093	348 aa	Predicted RBP	3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	OR8G1	Q15617	311 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	RFX4	Q33E94	735 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	DEFB121	Q5J5C9	76 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	FGD3	Q5JSP0	725 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	WDR38	Q5JTN6	314 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	METTL11B	Q5VVY1	283 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	METTL21C	Q5VZV1	264 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	PYHIN1	Q6K0P9	492 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	WDR82	Q6UXN9	313 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	ADAMTSL5	Q6ZMM2	481 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	ZNF730	Q6ZMV8	503 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	C9orf47	Q6ZRZ4	202 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	ZNF826P	Q6ZT77	177 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	MRPL21	Q7Z2W9	205 aa	Known RBP	3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	NAA40	Q86UY6	237 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	C11orf53	Q8IXP5	236 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	IQCF1	Q8N6M8	205 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	SDR9C7	Q8NEX9	313 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	OR8J1	Q8NGP2	316 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	OR11L1	Q8NGX0	322 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	SECTM1	Q8WVN6	248 aa		3.37	□□□□□ -1.87
VPS52-222	ENST00000495981	ZNRF4	Q8WWF5	429 aa		3.37	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms