RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 HAAOP46952 286 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 FUT6P51993 359 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 HERV-K104P61576 105 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 TSC22D1Q15714 1073 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 BCO1Q9HAY6 547 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 ICE1Q9Y2F5 2266 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 PQLC2LA1A4F0 135 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 E5RGE8 158 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 OR2C1O95371 312 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 OR8B8Q15620 311 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 ZNF488Q96MN9 340 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 NSG2Q9Y328 171 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 UBE2J1Q9Y385 318 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 H7C1Q1 480 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 LILRA1O75019 489 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 NDUFS6O75380 124 aaKnown RBP14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 CD59P13987 128 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 ARL6IP1Q15041 203 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 CLEC12BQ2HXU8 276 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 SOHLH1Q5JUK2 328 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 NUFIP2Q7Z417 695 aaKnown RBP14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 SUMF2Q8NBJ7 301 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 IGSF23A1L1A6 192 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 DANCRP0C864 163 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 SP9P0CG40 484 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 GLP1RP43220 463 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 RBM11P57052 281 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 GFI1BQ5VTD9 330 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 DBX2Q6ZNG2 339 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 C15orf54Q8N8G6 183 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 DMBX1Q8NFW5 382 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 C1QTNF5Q9BXJ0 243 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 STARD10Q9Y365 291 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 RRP8O43159 456 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 ST8SIA3O43173 380 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 ATP6V0CP27449 155 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 GNRHRP30968 328 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 EWSR1Q01844 656 aaKnown RBP eCLIP14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 MALLQ13021 153 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 PRDX4Q13162 271 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 ZNF674Q2M3X9 581 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 DEFB127Q9H1M4 99 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 HSF4Q9ULV5 492 aa14.17□□□□□ -0.14
CCDC88B-210ENST00000494566 ZNF724A8MTY0 619 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 CDX4O14627 284 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 ADAM20O43506 726 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 MT-ND4LP03901 98 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 SCTP09683 121 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 RPS16P62249 146 aaKnown RBP14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 ZNF154Q13106 437 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 SURF2Q15527 256 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 SPATA46Q5T0L3 261 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 MED12LQ86YW9 2145 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 OR5C1Q8NGR4 320 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 TMEM171Q8WVE6 324 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 HPSE2Q8WWQ2 592 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 PRSS50Q9UI38 385 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 SMG1Q96Q15 3661 aaKnown RBP14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 PDCD6O75340 191 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 IFNA4P05014 189 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 HEXAP06865 529 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 KIAA0141Q14154 515 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 HIKESHIQ53FT3 197 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 ASCL4Q6XD76 172 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 LIAT1Q6ZQX7 453 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 UBAC2Q8NBM4 344 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 ZNF552Q9H707 407 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 TUBD1Q9UJT1 453 aa14.16□□□□□ -0.14
CCDC88B-210ENST00000494566 NUDT19A8MXV4 375 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 CA11O75493 328 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 SYNGR4O95473 234 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 FGF8P55075 233 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 RPS23P62266 143 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 RAB1AP62820 205 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 GNMTQ14749 295 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 RTL6Q6ICC9 239 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 ZNF561Q8N587 486 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 CCDC54Q8NEL0 328 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 OR51H1Q8NH63 302 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 SCRT1Q9BWW7 348 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 HMGB3O15347 200 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 TNFSF15O95150 251 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 TAGLN2P37802 199 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 P2RY1P47900 373 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 TMPRSS7Q7RTY8 843 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 MRPL21Q7Z2W9 205 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 EDARADDQ8WWZ3 215 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 DDA1Q9BW61 102 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 ZNF286AQ9HBT8 521 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 B4GALT7Q9UBV7 327 aa14.15□□□□□ -0.14
CCDC88B-210ENST00000494566 TGIF2-C20orf24A0A0A6YYL0 155 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 SYNGR1O43759 233 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 GPR137BO60478 399 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 DTYMKP23919 212 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 MEOX1P50221 254 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 DYNLT3P51808 116 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 TMEM267Q0VDI3 215 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 TMEM164Q5U3C3 297 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF695Q8IW36 515 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 MSI2Q96DH6 328 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms