RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CACFD1Q9UGQ2 172 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 KCNS2Q9ULS6 477 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TIMM8BQ9Y5J9 83 aaPredicted RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LOC102724200A0A096LPH7 203 aaPredicted RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TGIF2-C20orf24A0A0A6YYL0 155 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQD3 144 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PHF1O43189 567 aaPredicted RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GLRA1P23415 457 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RPS4XP62701 263 aaKnown RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PAX5Q02548 391 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RELQ04864 619 aaPredicted RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PCK2Q16822 640 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAHD2BQ6P2I3 314 aaPredicted RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR10A7Q8NGE5 316 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR13D1Q8NGV5 346 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAHD2AQ96GK7 314 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RYDENQ9NUL5 291 aaKnown RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TP53TG5Q9Y2B4 290 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 KLF7O75840 302 aaPredicted RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 DXOO77932 396 aaKnown RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ABLIM2Q6H8Q1 611 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SLC25A26Q70HW3 274 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 C17orf82Q86X59 251 aaPredicted RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ARRDC1Q8N5I2 433 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR56B2PQ8NGI1 322 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CHST5Q9GZS9 411 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MGAQ8IWI9 3026 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF728P0DKX0 622 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FGF5P12034 268 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HNRNPA3P51991 378 aaKnown RBP9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PPP1R32Q7Z5V6 425 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 REEP6Q96HR9 211 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TRAV39A0A0B4J263 110 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 C3orf80F5H4A9 247 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZBTB25P24278 435 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CD82P27701 267 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 NUTF2P61970 127 aaKnown RBP9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RAC1P63000 192 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SLC23A3Q6PIS1 610 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 NFAM1Q8NET5 270 aaPredicted RBP9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR5L1Q8NGL2 311 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GNPNAT1Q96EK6 184 aaPredicted RBP9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF2Q9BSG1 426 aaPredicted RBP9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SRXN1Q9BYN0 137 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR51I2Q9H344 312 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PAM16Q9Y3D7 125 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TMED3Q9Y3Q3 217 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CHCHD2Q9Y6H1 151 aaPredicted RBP9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CREBBPQ92793 2442 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OPN1MWP04001 364 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 METTL15P1P0C7V9 234 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OPN1MW2P0DN77 364 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OPN1MW3P0DN78 364 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 IL2RGP31785 369 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 KRTDAPP60985 99 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ERVS71-1P61550 626 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SUMO1P63165 101 aaKnown RBP9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TRA2AQ13595 282 aaKnown RBP eCLIP9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 COL5A1-AS1Q5SY13 56 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TSPO2Q5TGU0 170 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF880Q6PDB4 577 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 C6orf201Q7Z4U5 140 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GPR27Q9NS67 375 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ALPK3Q96L96 1907 aa9.38□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZFYVE26Q68DK2 2539 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 NUP210Q8TEM1 1887 aaPredicted RBP9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 NOTCH3Q9UM47 2321 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 IGLV1-36A0A0B4J1U3 117 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 A0A1W2PNV4 684 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MSGN1A6NI15 193 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 NKX2-1P43699 371 aaPredicted RBP9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RRADP55042 308 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HTD2P86397 168 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 IGFBP7Q16270 282 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TMEM183BQ1AE95 376 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SP6Q3SY56 376 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CARFQ8N187 725 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 EDARADDQ8WWZ3 215 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ARHGAP5-AS1Q96IT6 56 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAM103A1Q9BTL3 118 aaKnown RBP9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LHX6Q9UPM6 363 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RNF24Q9Y225 148 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF320A2RRD8 509 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 G3V3Q6 166 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 H0YL77 283 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SOCS1O15524 211 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FGF16O43320 207 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CCKARP32238 428 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF92Q03936 586 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ACOT6Q3I5F7 207 aaPredicted RBP9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIKESHIQ53FT3 197 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF766Q5HY98 468 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LY6G6FQ5SQ64 297 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 POC1BQ8TC44 478 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TBX15Q96SF7 602 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 C2orf88Q9BSF0 95 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TUBA4BQ9H853 241 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 C9orf172C9J069 976 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CST7O76096 145 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GCGP01275 180 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms