RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 OR4A4PQ8NGN8 299 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 DUX4Q9UBX2 424 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 LSM5Q9Y4Y9 91 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 GTF3C1Q12789 2109 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 IGHV1-18A0A0C4DH31 117 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 NXPH2O95156 264 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 SCGB1D2O95969 90 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 MBPP02686 304 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 ZP3P21754 424 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 SPIN3Q5JUX0 258 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 GAPTQ8N292 157 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 EIF4E3Q8N5X7 224 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 BVESQ8NE79 360 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 TMEM222Q9H0R3 208 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 TREM2Q9NZC2 230 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 PCDHB10Q9UN67 800 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 OR5H1A6NKK0 313 aa17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 ZNF146Q15072 292 aa17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 MEX3BQ6ZN04 569 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 BEND4Q6ZU67 534 aa17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 SLC35G3Q8N808 338 aa17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 SNIP1Q8TAD8 396 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 PLPPR1Q8TBJ4 325 aa17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 LINC00052Q96N35 136 aa17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 CABLES2Q9BTV7 478 aa17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 FAM215AQ9Y5M1 114 aa17.88■□□□□ 0.45
CCDC88B-208ENST00000492980 MUC6Q6W4X9 2439 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 IGHV2OR16-5A0A0B4J2B6 119 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 KITLGP21583 273 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 TUBG1P23258 451 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 SRPXP78539 464 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 SHEQ5VZ18 495 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 BCL2L14Q9BZR8 327 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 TUBG2Q9NRH3 451 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 CCL28Q9NRJ3 127 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 TMED3Q9Y3Q3 217 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 AKAP13Q12802 2813 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 K7EPK0 472 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 ACAA1P09110 424 aaPredicted RBP17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 RPL12P30050 165 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 TMEM268Q5VZI3 342 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 ZNF324BQ6AW86 544 aaPredicted RBP17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 ZNF497Q6ZNH5 498 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 FAM71E2Q8N5Q1 922 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 HES4Q9HCC6 221 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 AMDHD2Q9Y303 409 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 SLC25A15Q9Y619 301 aa17.87■□□□□ 0.45
CCDC88B-208ENST00000492980 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 HSD17B6O14756 317 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 C11orf53Q8IXP5 236 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 H1FOOQ8IZA3 346 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 RPRMLQ8N4K4 120 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 OR52M1Q8NGK5 317 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 TMEM56Q96MV1 263 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 USB1Q9BQ65 265 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 DNTTIP1Q9H147 329 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 LUZP4Q9P127 313 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 FZR1Q9UM11 496 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 TMEM56-RWDD3S4R434 201 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 LGALS8O00214 317 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 TAAR5O14804 337 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 FGF16O43320 207 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 CRYZL1O95825 349 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 MOB1BQ7L9L4 216 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 ASCL5Q7RTU5 278 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 FAM169BQ8N8A8 192 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 OR10J5Q8NHC4 309 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 KIRREL1Q96J84 757 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 SLX1AQ9BQ83 275 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 CXXC4Q9H2H0 198 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 NARFLQ9H6Q4 476 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 ZC4H2Q9NQZ6 224 aa17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 UBE2J1Q9Y385 318 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-208ENST00000492980 GVINP1Q7Z2Y8 2422 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 SH2D1BO14796 132 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 TIMM8AO60220 97 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 CRYABP02511 175 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 C1orf185Q5T7R7 199 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 PRR14LQ5THK1 2151 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 Q6ZR03 302 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 TMED6Q8WW62 240 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 GPHA2Q96T91 129 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 OR2S2Q9NQN1 319 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 OR2W1Q9Y3N9 320 aa17.85■□□□□ 0.45
CCDC88B-208ENST00000492980 TRAV39A0A0B4J263 110 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 NPIPB11E5RHQ5 1161 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 FABP6P51161 128 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 ZNF718Q3SXZ3 478 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 MBNL2Q5VZF2 373 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 SVILO95425 2214 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 CEP250Q9BV73 2442 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 E5RGE8 158 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 RPL7L1Q6DKI1 246 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 ZNF474Q6S9Z5 364 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 ZNF826PQ6ZT77 177 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 SELENOHQ8IZQ5 122 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 GALNT11Q8NCW6 608 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 OR4D5Q8NGN0 318 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 TLNRD1Q9H1K6 362 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 PLEKHA2Q9HB19 425 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms