RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 CALYQ9NYX4 217 aa12.17□□□□□ -0.46
USP39-217ENST00000491659 DPM3Q9P2X0 92 aa12.17□□□□□ -0.46
USP39-217ENST00000491659 MRPS28Q9Y2Q9 187 aaKnown RBP12.17□□□□□ -0.46
USP39-217ENST00000491659 TET2Q6N021 2002 aaPredicted RBP12.16□□□□□ -0.46
USP39-217ENST00000491659 A0A087X0M5 115 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 A0A1B0GX30 115 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 A6NDX4 124 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 LEUTXA8MZ59 168 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 GEMIN2O14893 280 aaKnown RBP12.16□□□□□ -0.46
USP39-217ENST00000491659 IL1AP01583 271 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 EFNB2P52799 333 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 PRRX1P54821 245 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 HLA-DRB5Q30154 266 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 ATAD3CQ5T2N8 411 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 TMEM219Q86XT9 240 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 CDH26Q8IXH8 852 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 MRGPRDQ8TDS7 321 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 NEK7Q8TDX7 302 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 KIRREL1Q96J84 757 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 IDI2-AS1Q9NZ38 188 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 SIGLEC9Q9Y336 463 aa12.16□□□□□ -0.46
USP39-217ENST00000491659 AMMECR1Q9Y4X0 333 aaPredicted RBP12.16□□□□□ -0.46
USP39-217ENST00000491659 TMEM30CPA0ZSE6 113 aa12.15□□□□□ -0.46
USP39-217ENST00000491659 IGLV1-47P01700 117 aa12.15□□□□□ -0.46
USP39-217ENST00000491659 JUNBP17275 347 aaPredicted RBP12.15□□□□□ -0.46
USP39-217ENST00000491659 BRS3P32247 399 aa12.15□□□□□ -0.46
USP39-217ENST00000491659 RBM39Q14498 530 aaKnown RBP12.15□□□□□ -0.46
USP39-217ENST00000491659 ARSJQ5FYB0 599 aaPredicted RBP12.15□□□□□ -0.46
USP39-217ENST00000491659 GLIPR1L1Q6UWM5 242 aa12.15□□□□□ -0.46
USP39-217ENST00000491659 CCBE1Q6UXH8 406 aaPredicted RBP12.15□□□□□ -0.46
USP39-217ENST00000491659 Q6ZTK2 550 aa12.15□□□□□ -0.46
USP39-217ENST00000491659 OR9G1Q8NH87 305 aa12.15□□□□□ -0.46
USP39-217ENST00000491659 SPACA1Q9HBV2 294 aa12.15□□□□□ -0.46
USP39-217ENST00000491659 TPRKBQ9Y3C4 175 aa12.15□□□□□ -0.46
USP39-217ENST00000491659 MGAM2Q2M2H8 2515 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 A0A1W2PP11 408 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 MYF6P23409 242 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 HERPUD1Q15011 391 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 SPHARQ15513 63 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 MED22Q15528 200 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 C2orf68Q2NKX9 166 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 CCDC144NLQ6NUI1 221 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 MS4A15Q8N5U1 240 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 KLHDC1Q8N7A1 406 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 MRPS24Q96EL2 167 aaKnown RBP12.14□□□□□ -0.47
USP39-217ENST00000491659 TMED9Q9BVK6 235 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 ANKRD60Q9BZ19 345 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 PRSS22Q9GZN4 317 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 MMP28Q9H239 520 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 MMP27Q9H306 513 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 ZNF702PQ9H963 129 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 ZNF581Q9P0T4 197 aa12.14□□□□□ -0.47
USP39-217ENST00000491659 PKD1L1Q8TDX9 2849 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 MEGF11A6BM72 1044 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 OOSP1A8MZH6 123 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 BUB1B-PAK6H3BSN5 160 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 PIN1P1O15428 100 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 PEX14O75381 377 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 CGB3P0DN86 165 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 CGB7P0DN87 165 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 VSIG10L2P0DP72 767 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 SSTR5P35346 364 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 VHLP40337 213 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 MNDAP41218 407 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 HSPA13P48723 471 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 SLC35A2P78381 396 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 LTC4SQ16873 150 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 RBM48Q5RL73 367 aaKnown RBP12.13□□□□□ -0.47
USP39-217ENST00000491659 TPTE2P1Q5T6R2 138 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 IZUMO2Q6UXV1 221 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 C16orf82Q7Z2V1 217 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 OR10A7Q8NGE5 316 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 CAPSLQ8WWF8 208 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 UFD1Q92890 307 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 AKR1E2Q96JD6 320 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 OR5M11Q96RB7 305 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 UQCC2Q9BRT2 126 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 LINC00574Q9H8X3 128 aa12.13□□□□□ -0.47
USP39-217ENST00000491659 LSM2Q9Y333 95 aaKnown RBP12.13□□□□□ -0.47
USP39-217ENST00000491659 FAM90A22PA8MWA6 464 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 MCRIP1C9JLW8 97 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 NPIPB11E5RHQ5 1161 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 RGS10O43665 173 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 CRTAPO75718 401 aaPredicted RBP12.12□□□□□ -0.47
USP39-217ENST00000491659 MGMTP16455 207 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 GNG10P50151 68 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 GPR50Q13585 617 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 ACSM3Q53FZ2 586 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 SGCDQ92629 289 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 TOMM40LQ969M1 308 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 RPEQ96AT9 228 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 SELENOIQ9C0D9 397 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 CST11Q9H112 138 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 RCC2Q9P258 522 aaKnown RBP12.12□□□□□ -0.47
USP39-217ENST00000491659 GHRLQ9UBU3 117 aa12.12□□□□□ -0.47
USP39-217ENST00000491659 TRAV39A0A0B4J263 110 aa12.11□□□□□ -0.47
USP39-217ENST00000491659 FAM90A10PA6NDY2 464 aa12.11□□□□□ -0.47
USP39-217ENST00000491659 FAM90A18PA6NE21 464 aa12.11□□□□□ -0.47
USP39-217ENST00000491659 FAM90A16PA6NEW6 464 aa12.11□□□□□ -0.47
USP39-217ENST00000491659 FAM90A20PA6NIJ5 464 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms