RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 RPUSD1Q9UJJ7 312 aaKnown RBP11.5□□□□□ -0.57
C9orf3-221ENST00000489562 ITPR3Q14573 2671 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 LOC105371242A0A075B767 164 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 MEIKINA0A087WXM9 373 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 TRGV10A0A0A0MS01 117 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 PPIAL4CA0A0B4J2A2 164 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 A0A0G2JMP0 313 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 A0A0X1KG70 313 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 KIAA1324LA8MWY0 1029 aaPredicted RBP11.49□□□□□ -0.57
C9orf3-221ENST00000489562 B4DSR2 109 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 CTDSPLO15194 276 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 PHF1O43189 567 aaPredicted RBP11.49□□□□□ -0.57
C9orf3-221ENST00000489562 ENSAO43768 121 aaKnown RBP11.49□□□□□ -0.57
C9orf3-221ENST00000489562 MT-ND4P03905 459 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 DTYMKP23919 212 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 IL2RGP31785 369 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 GLIPR1P48060 266 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 C6orf183Q5T699 404 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 OLFML2AQ68BL7 652 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 ZNF554Q86TJ5 538 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 DTX3Q8N9I9 347 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 ZNF565Q8N9K5 539 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 OR4M2Q8NGB6 313 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 MRPL30Q8TCC3 161 aaKnown RBP11.49□□□□□ -0.57
C9orf3-221ENST00000489562 RAB9BQ9NP90 201 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 KIF25Q9UIL4 384 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 TRAPPC2LQ9UL33 140 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 UBE2J1Q9Y385 318 aaPredicted RBP11.49□□□□□ -0.57
C9orf3-221ENST00000489562 LINC00312Q9Y6C7 94 aa11.49□□□□□ -0.57
C9orf3-221ENST00000489562 CSMD2Q7Z408 3487 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 A0A1W2PQ09 198 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 FAM157AC9JC47 383 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 LPLP06858 475 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 LIPFP07098 398 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 GZMKP49863 264 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 SRSF7Q16629 238 aaKnown RBP eCLIP11.48□□□□□ -0.57
C9orf3-221ENST00000489562 CR1LQ2VPA4 569 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 RTN4RL2Q86UN3 420 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 SNX29P2Q8IUI4 249 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 FGFRL1Q8N441 504 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 LINC01356Q8N9X3 169 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 LY6G5BQ8NDX9 201 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 NUDCD2Q8WVJ2 157 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 DYRK2Q92630 601 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 CORO2AQ92828 525 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 C19orf12Q9NSK7 152 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 MBNL3Q9NUK0 354 aaKnown RBP11.48□□□□□ -0.57
C9orf3-221ENST00000489562 ING3Q9NXR8 418 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 TAS2R3Q9NYW6 316 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 OPN4Q9UHM6 478 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 V9GYH0 126 aa11.48□□□□□ -0.57
C9orf3-221ENST00000489562 ZNF729A6NN14 1252 aaPredicted RBP11.47□□□□□ -0.57
C9orf3-221ENST00000489562 C22orf46C9J442 243 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 GABARAPH6UMI1 98 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 MSMBP08118 114 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 FCGR3AP08637 254 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 PPIAL4GP0DN37 164 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 GZMHP20718 246 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 ZFP36P26651 326 aaKnown RBP11.47□□□□□ -0.57
C9orf3-221ENST00000489562 GLP1RP43220 463 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 LCN2P80188 198 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 SSBP1Q04837 148 aaKnown RBP11.47□□□□□ -0.57
C9orf3-221ENST00000489562 TMEM249Q2WGJ8 235 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 ZNF880Q6PDB4 577 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 SPNS3Q6ZMD2 512 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 Q6ZS49 121 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 TRAPPC6BQ86SZ2 158 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 FAM185AQ8N0U4 392 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 TPRX1Q8N7U7 411 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 OR4K15Q8NH41 348 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 GPX8Q8TED1 209 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 SMIM4Q8WVI0 70 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 FCAMRQ8WWV6 532 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 ABHD1Q96SE0 405 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 OCSTAMPQ9BR26 566 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 HDHD3Q9BSH5 251 aaPredicted RBP11.47□□□□□ -0.57
C9orf3-221ENST00000489562 WDR12Q9GZL7 423 aaKnown RBP11.47□□□□□ -0.57
C9orf3-221ENST00000489562 GAL3ST2Q9H3Q3 398 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 AKIP1Q9NQ31 210 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 KCNIP1Q9NZI2 227 aa11.47□□□□□ -0.57
C9orf3-221ENST00000489562 TRAV20A0A0B4J274 112 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 IGHV2-70DA0A0C4DH43 119 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 KIR2DS1A0A191URI9 304 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 hCG_1809904A0A1W2PP81 198 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 A0A1W2PPE2 198 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 A0A1W2PR64 198 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 A0A1W2PRV1 198 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 GSTZ1O43708 216 aaPredicted RBP11.46□□□□□ -0.57
C9orf3-221ENST00000489562 ORC5O43913 435 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 SSX5O60225 188 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 RBP4P02753 201 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 PTHLHP12272 177 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 GATA3P23771 443 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 KIR2DS4P43632 304 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 ACTBP60709 375 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 ACTG1P63261 375 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 MADCAM1Q13477 382 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 KIR2DS1Q14954 304 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 TMEM30BQ3MIR4 351 aa11.46□□□□□ -0.57
C9orf3-221ENST00000489562 PYDC2Q56P42 97 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms