RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 IER3P46695 156 aa12□□□□□ -0.49
USP4-212ENST00000486549 CLDN12P56749 244 aa12□□□□□ -0.49
USP4-212ENST00000486549 RAB11BQ15907 218 aa12□□□□□ -0.49
USP4-212ENST00000486549 C17orf58Q2M2W7 97 aa12□□□□□ -0.49
USP4-212ENST00000486549 NKAPLQ5M9Q1 402 aa12□□□□□ -0.49
USP4-212ENST00000486549 CD200R1LQ6Q8B3 271 aa12□□□□□ -0.49
USP4-212ENST00000486549 LHFPL4Q7Z7J7 247 aa12□□□□□ -0.49
USP4-212ENST00000486549 C3orf56Q8N813 242 aa12□□□□□ -0.49
USP4-212ENST00000486549 TAF15Q92804 592 aaKnown RBP eCLIP12□□□□□ -0.49
USP4-212ENST00000486549 TMEM59Q9BXS4 323 aa12□□□□□ -0.49
USP4-212ENST00000486549 CHIAQ9BZP6 476 aa12□□□□□ -0.49
USP4-212ENST00000486549 SPACA1Q9HBV2 294 aa12□□□□□ -0.49
USP4-212ENST00000486549 CALYQ9NYX4 217 aa12□□□□□ -0.49
USP4-212ENST00000486549 RCC2Q9P258 522 aaKnown RBP12□□□□□ -0.49
USP4-212ENST00000486549 PEX16Q9Y5Y5 336 aa12□□□□□ -0.49
USP4-212ENST00000486549 SHISA3A0PJX4 238 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A10PA6NDY2 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 BTBD17A6NE02 478 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A18PA6NE21 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A16PA6NEW6 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A20PA6NIJ5 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A8PA6NJQ4 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A7PA6NKC0 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A22PA8MWA6 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A12PA8MX19 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A5PA8MXJ8 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A23PA8MXZ1 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 ODF3BA8MYP8 253 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 PDCD5O14737 125 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 TNFAIP8O95379 198 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 BPNT1O95861 308 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A15PP0C7V4 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A13PP0C7W8 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A14PP0C7W9 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 FAM90A24PP0C7X0 464 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 ARSBP15848 533 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 NFYBP25208 207 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 OR10A3P58181 314 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 RPS27AP62979 156 aaKnown RBP11.99□□□□□ -0.49
USP4-212ENST00000486549 FOXL1Q12952 345 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 UNC119Q13432 240 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 RBM39Q14498 530 aaKnown RBP11.99□□□□□ -0.49
USP4-212ENST00000486549 LTC4SQ16873 150 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 PLA1AQ53H76 456 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 HES5Q5TA89 166 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 ZNF626Q68DY1 528 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 SLC35E4Q6ICL7 350 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 C16orf87Q6PH81 154 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 HEPN1Q6WQI6 88 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 TMEM86BQ8N661 226 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 ZNF565Q8N9K5 539 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 OR11H6Q8NGC7 330 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 KCNG3Q8TAE7 436 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 CCDC107Q8WV48 283 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 DYRK2Q92630 601 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 CYYR1Q96J86 154 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 CLEC7AQ9BXN2 247 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 DPAGT1Q9H3H5 408 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 ETAA1Q9NY74 926 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 STUB1Q9UNE7 303 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 POMT1Q9Y6A1 747 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 V9GY05 133 aa11.99□□□□□ -0.49
USP4-212ENST00000486549 KBTBD11-OT1A0A1B0GTJ5 212 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 UBE2QL1A1L167 161 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 SMIM30A4D0T7 59 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 AIPO00170 330 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 CD37P11049 281 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 FUT3P21217 361 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 SSTR5P35346 364 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 PAX5Q02548 391 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 SIGIRRQ6IA17 410 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 OR52W1Q6IF63 320 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 ABHD12Q8N2K0 398 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 BEND2Q8NDZ0 799 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 TSPAN14Q8NG11 270 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 OR51D1Q8NGF3 324 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 RFESDQ8TAC1 157 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 NDNFQ8TB73 568 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 AJUBAQ96IF1 538 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 NICN1Q9BSH3 213 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 OR51E2Q9H255 320 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 NCOR1P1Q9H4R4 102 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 ZNF286AQ9HBT8 521 aa11.98□□□□□ -0.49
USP4-212ENST00000486549 TXNL4BQ9NX01 149 aaKnown RBP11.98□□□□□ -0.49
USP4-212ENST00000486549 TRAV1-2A0A0B4J238 106 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 FAM181BA6NEQ2 426 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 TMEM14DPA8MWL7 114 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 H3BUX3 64 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 PDCD6O75340 191 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 IL1AP01583 271 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 RAB3BP20337 219 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 GALP22466 123 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 CFPP27918 469 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 PSMD7P51665 324 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 QRFPP83859 136 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 LRRC75BQ2VPJ9 315 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 SYT6Q5T7P8 510 aaPredicted RBP11.97□□□□□ -0.49
USP4-212ENST00000486549 ZNF497Q6ZNH5 498 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 DYNAPQ8N1N2 210 aa11.97□□□□□ -0.49
USP4-212ENST00000486549 OR4K15Q8NH41 348 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms