RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SSTR5P35346 364 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 ERFP50548 548 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 PRKXP51817 358 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 TAS2R31P59538 309 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 RPL19P84098 196 aaKnown RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 CD164Q04900 197 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 ZNF763Q0D2J5 394 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 ST3GAL4Q11206 333 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 ECH1Q13011 328 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 KRR1Q13601 381 aaKnown RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 POU6F1Q14863 301 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 GUSBP1Q15486 140 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 SPA17Q15506 151 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 MAPK14Q16539 360 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 DEFB116Q30KQ4 102 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 FAM27D1Q5T7N8 215 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 TRIQKQ629K1 86 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 OR52E8Q6IFG1 317 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 FAM71E1Q6IPT2 247 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 DHRS4L2Q6PKH6 230 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 WDR82Q6UXN9 313 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 TMED4Q7Z7H5 227 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 LHFPL3Q86UP9 236 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 THOC6Q86W42 341 aaKnown RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 LGI3Q8N145 548 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 PDIK1LQ8N165 341 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 STK40Q8N2I9 435 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 OR2G2Q8NGZ5 317 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 MCOLN3Q8TDD5 553 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 CASTOR1Q8WTX7 329 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 RMND5BQ96G75 393 aaPredicted RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 SEC22AQ96IW7 307 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 ADTRPQ96IZ2 230 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 ZNF681Q96N22 645 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 RILPQ96NA2 401 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 OR5B12Q96R08 314 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 OR8B4Q96RC9 309 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 SORT1Q99523 831 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 GPR22Q99680 433 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 TMEM208Q9BTX3 173 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 DDA1Q9BW61 102 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 PCBD2Q9H0N5 130 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 RHOFQ9HBH0 211 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 ACOT13Q9NPJ3 140 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 FBXO6Q9NRD1 293 aaPredicted RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 SPANXB1Q9NS25 103 aaPredicted RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 DDX19AQ9NUU7 478 aaKnown RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 NUFIP1Q9UHK0 495 aaKnown RBP2.03□□□□□ -2.08
VPS41-213ENST00000485955 GNPTGQ9UJJ9 305 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 ZNF835Q9Y2P0 537 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 SPG11Q96JI7 2443 aa2.03□□□□□ -2.08
VPS41-213ENST00000485955 NF1P21359 2839 aa2.03□□□□□ -2.09
VPS41-213ENST00000485955 DUOX1Q9NRD9 1551 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 IGKV1D-17A0A075B6S4 117 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 ZNF816-ZNF321PA0A0X1KG74 233 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 A0A1W2PRG6 482 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 LYRM9A8MSI8 78 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 SMKR1H3BMG3 65 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 KCNK1O00180 336 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 PSMD12O00232 456 aaPredicted RBP2.02□□□□□ -2.09
VPS41-213ENST00000485955 NME4O00746 187 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 CDIPTO14735 213 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 PFDN6O15212 129 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 KMOO15229 486 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 KLRC4O43908 158 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 UGT1A9O60656 530 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 SLC16A7O60669 478 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 AQP8O94778 261 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 CNIH1O95406 144 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 CD74P04233 296 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 TYMSP04818 313 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 BCHEP06276 602 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 GUSBP08236 651 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 ZDHHC11BP0C7U3 371 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 HIST1H1EP10412 219 aaKnown RBP2.02□□□□□ -2.09
VPS41-213ENST00000485955 HRH1P35367 487 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 PTGDSP41222 190 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 GSSP48637 474 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 KLK7P49862 253 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 HCCSP53701 268 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 AQP5P55064 265 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 FGF8P55075 233 aaPredicted RBP2.02□□□□□ -2.09
VPS41-213ENST00000485955 DLX6P56179 175 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 TMEM33P57088 247 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 TAS2R19P59542 299 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 SEMG2Q02383 582 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 SP4Q02446 784 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 RPL18AQ02543 176 aaKnown RBP2.02□□□□□ -2.09
VPS41-213ENST00000485955 SLC39A6Q13433 755 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 TFDP2Q14188 446 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 PRPSAP1Q14558 356 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 ZNF235Q14590 738 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 TRAM1Q15629 374 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 TRIP13Q15645 432 aaPredicted RBP2.02□□□□□ -2.09
VPS41-213ENST00000485955 TBC1D28Q2M2D7 210 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 TEX30Q5JUR7 227 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 BRMS1LQ5PSV4 323 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 C1orf100Q5SVJ3 147 aa2.02□□□□□ -2.09
VPS41-213ENST00000485955 HES5Q5TA89 166 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms