RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 LINC00588Q9Y4M8 146 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 TBL2Q9Y4P3 447 aaKnown RBP0.69□□□□□ -2.3
VPS50-216ENST00000484954 OR51B4Q9Y5P0 310 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 NOS1P29475 1434 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 SETD1AO15047 1707 aaKnown RBP0.69□□□□□ -2.3
VPS50-216ENST00000484954 TNIKQ9UKE5 1360 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 STRCP1A6NGW2 1772 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 MPDZO75970 2070 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 IGHV2-26A0A0B4J1V2 119 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 PGPA6NDG6 321 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 C17orf98A8MV24 154 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 BOLA2-SMG1P6H3BVE0 249 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 hCG_2039718K7EN88 272 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 PLPP3O14495 311 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 POLR3GO15318 223 aaPredicted RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 SH2D1AO60880 128 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 PSIP1O75475 530 aaKnown RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 POP7O75817 140 aaKnown RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 SCGB1C2P0DMR2 95 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 CRABP2P29373 138 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 DEKP35659 375 aaKnown RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 RANBP1P43487 201 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 DNASE1L1P49184 302 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 OR10A3P58181 314 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 PSG4Q00888 419 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 PRDX1Q06830 199 aaKnown RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 BNIP2Q12982 314 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 MMDQ15546 238 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 TRAM1Q15629 374 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 ZBTB6Q15916 424 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 PSG3Q16557 428 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 TTMPQ5BVD1 217 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 C10orf91Q5T1B1 145 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 DGAT2L6Q6ZPD8 337 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 CLEC20AQ6ZU45 233 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 TCF23Q7RTU1 214 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 RBM45Q8IUH3 476 aaKnown RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 OR8G5Q8NG78 346 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 SCGB1C1Q8TD33 95 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 PDCD6IPQ8WUM4 868 aaKnown RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 KCTD4Q8WVF5 259 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 PRRG3Q9BZD7 231 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 ALX4Q9H161 411 aaPredicted RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 FBXL15Q9H469 300 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 METTL17Q9H7H0 456 aaPredicted RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 SLC23A2Q9UGH3 650 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 RPUSD1Q9UJJ7 312 aaKnown RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 C14orf166Q9Y224 244 aaKnown RBP0.68□□□□□ -2.3
VPS50-216ENST00000484954 BTRCQ9Y297 605 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 POFUT2Q9Y2G5 429 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 ADGRB3O60242 1522 aa0.68□□□□□ -2.3
VPS50-216ENST00000484954 ATRNO75882 1429 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 TRBV24-1A0A075B6N3 115 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 IGHV3OR15-7A0A075B7D8 119 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 IGKV1-12A0A0C4DH73 117 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 ZNF860A6NHJ4 632 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 S1PR2O95136 353 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 GPR75O95800 540 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 LTAP01374 205 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 IGKV1D-12P01611 117 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 IVLP07476 585 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 SLC2A1P11166 492 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 S100A2P29034 98 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 MAGEA3P43357 314 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 HBG1P69891 147 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 HBG2P69892 147 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 CD164Q04900 197 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 OR8G1Q15617 311 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 CST6Q15828 149 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 GOLGA7BQ2TAP0 167 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 ZCWPW2Q504Y3 356 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 NXNL2Q5VZ03 156 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 HBMQ6B0K9 141 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 NOXRED1Q6NXP6 359 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 COPS6Q7L5N1 327 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 NIT1Q86X76 327 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 ST13P4Q8IZP2 240 aaPredicted RBP0.67□□□□□ -2.3
VPS50-216ENST00000484954 PDCL2Q8N4E4 241 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 OR11G2Q8NGC1 345 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 OR8K1Q8NGG5 319 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 SUN5Q8TC36 379 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 TMIGD2Q96BF3 282 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 CIB1Q99828 191 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 COPS4Q9BT78 406 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 TTTY12Q9BZ98 90 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 ULBP1Q9BZM6 244 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 ARL6Q9H0F7 186 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 VCX3AQ9NNX9 186 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 IFT46Q9NQC8 304 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 MRM2Q9UI43 246 aaKnown RBP0.67□□□□□ -2.3
VPS50-216ENST00000484954 ENPP5Q9UJA9 477 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 CCL26Q9Y258 94 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 SNX24Q9Y343 169 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 PHLDA3Q9Y5J5 127 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 MTCH2Q9Y6C9 303 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 USH1CQ9Y6N9 552 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 URGCP-MRPS24S4R325 110 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 HSPE1-MOB4S4R3N1 261 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 CR1P17927 2039 aa0.67□□□□□ -2.3
VPS50-216ENST00000484954 TMEM131Q92545 1883 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms