RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ALPIP09923 528 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 SFTA3P0C7M3 94 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 OR5H8P0DN80 308 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 SLC2A5P22732 501 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 GABRR2P28476 465 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 ACTR1BP42025 376 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 KCNJ3P48549 501 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 ARRB1P49407 418 aaPredicted RBP4.18□□□□□ -1.74
USP40-213ENST00000483216 ACTR1AP61163 376 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 FAM3AP98173 230 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 OC90Q02509 493 aaPredicted RBP4.18□□□□□ -1.74
USP40-213ENST00000483216 DOC2AQ14183 400 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 GGTLC2Q14390 218 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 CDK5R1Q15078 307 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 Q499Y3 187 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 FBXO48Q5FWF7 155 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 TMEM255AQ5JRV8 349 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 ACSM5Q6NUN0 579 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 NIPAL3Q6P499 406 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 FAM199XQ6PEV8 388 aaPredicted RBP4.18□□□□□ -1.74
USP40-213ENST00000483216 AGTRAPQ6RW13 159 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 BTNL3Q6UXE8 466 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 UNQ9370/PRO34162Q6UXP9 181 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 ZNF620Q6ZNG0 422 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 SLC36A1Q7Z2H8 476 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 KRTAP11-1Q8IUC1 163 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 PIANPQ8IYJ0 282 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 ZNF683Q8IZ20 524 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 TRAM1L1Q8N609 369 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 MORN4Q8NDC4 146 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 STEAP2Q8NFT2 490 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 OR51G2Q8NGK0 314 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 OR5AK2Q8NH90 309 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 SYNPRQ8TBG9 265 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 C16orf78Q8WTQ4 265 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 MITD1Q8WV92 249 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 MED8Q96G25 268 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 SAMD8Q96LT4 415 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 TEAD3Q99594 435 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 HCAR1Q9BXC0 346 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 EBPLQ9BY08 206 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 SLC35B3Q9H1N7 401 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 RAB18Q9NP72 206 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 UBQLN4Q9NRR5 601 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 ELOVL2Q9NXB9 296 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 GHRLQ9UBU3 117 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 IL20RAQ9UHF4 553 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 MED31Q9Y3C7 131 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 FLVCR1Q9Y5Y0 555 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 FRMPD3Q5JV73 1810 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 PLXNA3P51805 1871 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 ANKRD36A6QL64 1941 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 CENPFP49454 3210 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 A0A1B0GTI1 187 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 LRIT2A6NDA9 550 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 FRG2CA6NGY1 282 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 EPOPA6NHQ4 379 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 ZNF736B4DX44 427 aaPredicted RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 G3V3Q6 166 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 M0R036 132 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 M0R143 59 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 GPR31O00270 319 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 CDX4O14627 284 aaPredicted RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 MBTPS2O43462 519 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 LANCL1O43813 399 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 GCM2O75603 506 aaPredicted RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 STK17BO94768 372 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 IGF2P01344 180 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 HLA-AP01891 365 aaKnown RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 HBE1P02100 147 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 CD5P06127 495 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 GLAP06280 429 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 DBIP07108 87 aaKnown RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 ASGR1P07306 291 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 ERCC1P07992 297 aaPredicted RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 SEC11BP0C7V7 166 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 ZNF44P15621 663 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 PYCR1P32322 319 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 DRD3P35462 400 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 GPX4P36969 197 aaPredicted RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 POU3F4P49335 361 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 SULT1A2P50226 295 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 PPT1P50897 306 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 P2RX1P51575 399 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 CASP9P55211 416 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 LIM2P55344 173 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 CAV3P56539 151 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 TAS2R20P59543 309 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 PFN3P60673 137 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 PRPS1P60891 318 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 TLE4Q04727 773 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 ELOCQ15369 112 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 SURF2Q15527 256 aaPredicted RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 IQCJQ1A5X6 159 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 LINC00303Q3SY05 128 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 THEM4Q5T1C6 240 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 GPR157Q5UAW9 335 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 FAM151BQ6UXP7 276 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 DPPA3Q6W0C5 159 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 SMIM15Q7Z3B0 74 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms