RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SNRNP70P08621 437 aaKnown RBP9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 HCKP08631 526 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 CCDC159P0C7I6 412 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PF4V1P10720 104 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 C21orf33P30042 268 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GTF2A1P52655 376 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SLC35A2P78381 396 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RCN1Q15293 331 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PAN3Q58A45 887 aaKnown RBP9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 DRAM1Q8N682 238 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 C5orf56Q8N8D9 126 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 HAVCR2Q8TDQ0 301 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 BARHL1Q9BZE3 327 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 VCXQ9H320 206 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 DCLRE1BQ9H816 532 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 FGF20Q9NP95 211 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ING3Q9NXR8 418 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SMPD3Q9NY59 655 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IL36GQ9NZH8 169 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 DHDHQ9UQ10 334 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MEIKINA0A087WXM9 373 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 WI2-2373I1.2A0A1W2PRP0 233 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 C15orf65H3BRN8 121 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 WBP4O75554 376 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MPIG6BO95866 241 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IGHG2P01859 326 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RAB3AP20336 220 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 NFYBP25208 207 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RAB7AP51149 207 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GBX2P52951 348 aaPredicted RBP9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ZNF816Q0VGE8 651 aaPredicted RBP9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RBM39Q14498 530 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PIGYQ3MUY2 71 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 CCDC58Q4VC31 144 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 KLHL22Q53GT1 634 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 XAF1Q6GPH4 301 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MRPL41Q8IXM3 137 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR8H3Q8N146 312 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR56B4Q8NH76 319 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RFESDQ8TAC1 157 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 CAPSLQ8WWF8 208 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LEAP2Q969E1 77 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RPEQ96AT9 228 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 NR1H4Q96RI1 486 aaPredicted RBP9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 FAM118AQ9NWS6 357 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 AMMECR1Q9Y4X0 333 aaPredicted RBP9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 DNAH9Q9NYC9 4486 aa9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 KMT2CQ8NEZ4 4911 aaKnown RBP9.68□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PSMB11A5LHX3 300 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 HSPB6O14558 160 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OGG1O15527 345 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GPX5O75715 221 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IGHV3-7P01780 117 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PF4P02776 101 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GZMHP20718 246 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GLP1RP43220 463 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 THBS3P49746 956 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RPL23AP62750 156 aaKnown RBP9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MADCAM1Q13477 382 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TTC23Q5W5X9 447 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LPCAT4Q643R3 524 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RPL22L1Q6P5R6 122 aaKnown RBP9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ZNF329Q86UD4 541 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LINC00311Q8N616 119 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 Q8N6K4 173 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 C8orf31Q8N9H6 132 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SUMF2Q8NBJ7 301 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR52M1Q8NGK5 317 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR10K1Q8NGX5 313 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MRGPRDQ8TDS7 321 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 CHPT1Q8WUD6 406 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TNFAIP8L1Q8WVP5 186 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TOMM40LQ969M1 308 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ST6GALNAC6Q969X2 333 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 CPNE2Q96FN4 548 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 NOL4LQ96MY1 436 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 P2RX4Q99571 388 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 DPCDQ9BVM2 203 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TAS2R4Q9NYW5 299 aa9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RPL36Q9Y3U8 105 aaKnown RBP9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SIRT4Q9Y6E7 314 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LINC01548A6NM66 108 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ANKRD65E5RJM6 399 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 CDRT1O95170 752 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IGFBP3P17936 291 aaPredicted RBP9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SLC6A1P30531 599 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SSTR5P35346 364 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ETV1P50549 477 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RBM11P57052 281 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RSU1Q15404 277 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 C9orf152Q5JTZ5 239 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 C18orf65Q6ZTR6 163 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR2W3Q7Z3T1 314 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ZNF485Q8NCK3 441 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TMEM104Q8NE00 496 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SETD9Q8NE22 299 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GPR148Q8TDV2 347 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TSEN15Q8WW01 171 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TMEM106AQ96A25 262 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PLSCR3Q9NRY6 295 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms