RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 IFT22Q9H7X7 185 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 EXOSC1Q9Y3B2 195 aaKnown RBP11.26□□□□□ -0.61
UPF3A-204ENST00000475218 MEIKINA0A087WXM9 373 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 TRBV5-7A0A0A0MS05 114 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 FBXO24O75426 580 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 GPX5O75715 221 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 HTR3BO95264 441 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 SSTR5P35346 364 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 GLP1RP43220 463 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 RBM11P57052 281 aaKnown RBP11.26□□□□□ -0.61
UPF3A-204ENST00000475218 ST3GAL4Q11206 333 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 DIAPH2-AS1Q14236 149 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 RSU1Q15404 277 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 TCTEX1D4Q5JR98 221 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 OGFRL1Q5TC84 451 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-204ENST00000475218 DDI2Q5TDH0 399 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 LYPD6Q86Y78 171 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 DHRSXQ8N5I4 330 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 SUMF2Q8NBJ7 301 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 OR4D6Q8NGJ1 314 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 MMP28Q9H239 520 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 SH2D7A6NKC9 451 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-204ENST00000475218 LEUTXA8MZ59 168 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 GEMIN2O14893 280 aaKnown RBP11.25□□□□□ -0.61
UPF3A-204ENST00000475218 XPNPEP2O43895 674 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 IL1AP01583 271 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 CD2P06729 351 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 NFYBP25208 207 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 BDKRB2P30411 391 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 ZNF93P35789 620 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-204ENST00000475218 BEAN1Q3B7T3 259 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 NSUN5P1Q3KNT7 163 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 SAMD5Q5TGI4 173 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 FAM53AQ6NSI3 398 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-204ENST00000475218 MRGPRDQ8TDS7 321 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 DPCDQ9BVM2 203 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-204ENST00000475218 LIN7BQ9HAP6 207 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 PSG11Q9UQ72 335 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 ST3GAL6Q9Y274 331 aa11.25□□□□□ -0.61
UPF3A-204ENST00000475218 IRGMA1A4Y4 181 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A18PA6NE21 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A16PA6NEW6 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A20PA6NIJ5 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A9PA6NNJ1 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A12PA8MX19 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A5PA8MXJ8 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 J3QR06 171 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 PIN1P1O15428 100 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 MAGEB3O15480 346 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A15PP0C7V4 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A13PP0C7W8 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A14PP0C7W9 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 FAM90A24PP0C7X0 464 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 MYL12AP19105 171 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 HSPA13P48723 471 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 KPRPQ5T749 579 aaPredicted RBP11.24□□□□□ -0.61
UPF3A-204ENST00000475218 C10orf99Q6UWK7 81 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 OSR2Q8N2R0 312 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 DTX3Q8N9I9 347 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 OR9G1Q8NH87 305 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 RFESDQ8TAC1 157 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 CPNE2Q96FN4 548 aaPredicted RBP11.24□□□□□ -0.61
UPF3A-204ENST00000475218 RBM14Q96PK6 669 aaKnown RBP11.24□□□□□ -0.61
UPF3A-204ENST00000475218 IDI2-AS1Q9NZ38 188 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 PSORS1C1Q9UIG5 152 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 ING4Q9UNL4 249 aa11.24□□□□□ -0.61
UPF3A-204ENST00000475218 A0A1W2PPI3 338 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 A0A1W2PPK0 400 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 FSTP19883 344 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 C21orf33P30042 268 aaPredicted RBP11.23□□□□□ -0.61
UPF3A-204ENST00000475218 CAPGP40121 348 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 VDAC2P45880 294 aaPredicted RBP11.23□□□□□ -0.61
UPF3A-204ENST00000475218 RBM39Q14498 530 aaKnown RBP11.23□□□□□ -0.61
UPF3A-204ENST00000475218 Q499Y3 187 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 C16orf82Q7Z2V1 217 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 NDUFA11Q86Y39 141 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 SETD9Q8NE22 299 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 OR14A2Q96R54 314 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 SLC25A33Q9BSK2 321 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 BARHL1Q9BZE3 327 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 METTL9Q9H1A3 318 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 C8orf4Q9NR00 106 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 FKBP14Q9NWM8 211 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 NOTCH3Q9UM47 2321 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 PNMA8CA0A1B0GUJ8 204 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 C15orf65H3BRN8 121 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 TOR1AO14656 332 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 DENRO43583 198 aaKnown RBP11.23□□□□□ -0.61
UPF3A-204ENST00000475218 OR2F2O95006 317 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 SERPINA2P20848 420 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 PRRX1P54821 245 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 PPP3R1P63098 170 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 CD83Q01151 205 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 LTC4SQ16873 150 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 ABCA11PQ4W5N1 156 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 YIF1BQ5BJH7 314 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 ZNF565Q8N9K5 539 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 PLCXD1Q9NUJ7 323 aa11.23□□□□□ -0.61
UPF3A-204ENST00000475218 CNOT2Q9NZN8 540 aaKnown RBP11.23□□□□□ -0.61
UPF3A-204ENST00000475218 HSPE1-MOB4S4R3N1 261 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms