RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 LRIT1Q9P2V4 623 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 ST3GAL6Q9Y274 331 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 HS3ST2Q9Y278 367 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.68□□□□□ -1.82
VPS50-210ENST00000471188 RNF115Q9Y4L5 304 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 OR1A2Q9Y585 309 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 R4GMQ9 66 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 COL4A3Q01955 1670 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 ATG2BQ96BY7 2078 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 DUXBA0A1W2PPF3 345 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 NKX2-6A6NCS4 301 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 CEACAM18A8MTB9 384 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 B4DGG1 531 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 K7EQS6 105 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 SH2D1BO14796 132 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 TOMM40O96008 361 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 POU2F2P09086 479 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 S100GP29377 79 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 ADMP35318 185 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 BLKP51451 505 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 TRIM61Q5EBN2 209 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 SPIN3Q5JUX0 258 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 CYP2G1PQ6ZSU1 146 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 ERN2Q76MJ5 926 aaKnown RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 Q8N3U1 123 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 TCTEX1D1Q8N7M0 179 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 OR52N5Q8NH56 324 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 PYGO2Q9BRQ0 406 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 HDHD3Q9BSH5 251 aaPredicted RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 SLC46A2Q9BY10 475 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 SLC39A9Q9NUM3 307 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 PLEKHJ1Q9NW61 149 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 COA3Q9Y2R0 106 aaPredicted RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 POLR1DQ9Y2S0 133 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 UBE2J1Q9Y385 318 aaPredicted RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 IGKV1D-8A0A087WSZ0 117 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 ZNF891A8MT65 544 aaPredicted RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 TMEM14DPA8MWL7 114 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 TRAF3IP2O43734 574 aaPredicted RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 B3GALT2O43825 422 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 SAP30O75446 220 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 PIAS2O75928 621 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 GYPAP02724 150 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 CT62P0C5K7 136 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 IGLC2P0DOY2 106 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 IGLC3P0DOY3 106 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 CTLA4P16410 223 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 NTF3P20783 257 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 GNRHRP30968 328 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 RRADP55042 308 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 TAS2R30P59541 319 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 UBE2NP61088 152 aaKnown RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 CXorf66Q5JRM2 361 aaPredicted RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 AMMECR1LQ6DCA0 310 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 WBP2NLQ6ICG8 309 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 FDX2Q6P4F2 183 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 FIGLAQ6QHK4 219 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 ABHD12BQ7Z5M8 362 aaPredicted RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 MRGPRGQ86SM5 289 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 ZNF695Q8IW36 515 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 C9orf40Q8IXQ3 194 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 SHISA5Q8N114 240 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 OR52L2PQ8NGH6 319 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 OR4D5Q8NGN0 318 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 OR10G4Q8NGN3 311 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 OR11L1Q8NGX0 322 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 SLAMF6Q96DU3 332 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 PECRQ9BY49 303 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 VSIRQ9H7M9 311 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 MMP25Q9NPA2 562 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 PNO1Q9NRX1 252 aaKnown RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 CLEC5AQ9NY25 188 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 SPACA6W5XKT8 324 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 DIDO1Q9BTC0 2240 aaKnown RBP3.67□□□□□ -1.82
VPS50-210ENST00000471188 VCANP13611 3396 aa3.67□□□□□ -1.82
VPS50-210ENST00000471188 DNAH14Q0VDD8 3507 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 TNRC18O15417 2968 aaPredicted RBP3.66□□□□□ -1.82
VPS50-210ENST00000471188 GAGE12BA1L429 117 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 CLEC18AA5D8T8 446 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 FAM166BA8MTA8 275 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 ZNF732B4DXR9 585 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 KBTBD11O94819 623 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 SYNGR4O95473 234 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 CD99P14209 185 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 CBLN1P23435 193 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 TSPOP30536 169 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 CAPZBP47756 277 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 PSMB3P49720 205 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 METAP1P53582 386 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 CLDN17P56750 224 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 MEF2BQ02080 365 aaPredicted RBP3.66□□□□□ -1.82
VPS50-210ENST00000471188 TMEM187Q14656 261 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 SMIM21Q3B7S5 101 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 CFAP161Q6P656 301 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 PARS2Q7L3T8 475 aaKnown RBP3.66□□□□□ -1.82
VPS50-210ENST00000471188 C6orf201Q7Z4U5 140 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 UEVLDQ8IX04 471 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 C1orf174Q8IYL3 243 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 CLEC18CQ8NCF0 446 aa3.66□□□□□ -1.82
VPS50-210ENST00000471188 OR4C3Q8NH37 302 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms