RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CD177Q8N6Q3 437 aa11.97□□□□□ -0.49
USP39-207ENST00000450066 OR4A4PQ8NGN8 299 aa11.97□□□□□ -0.49
USP39-207ENST00000450066 OR11L1Q8NGX0 322 aa11.97□□□□□ -0.49
USP39-207ENST00000450066 PPP1R3CQ9UQK1 317 aa11.97□□□□□ -0.49
USP39-207ENST00000450066 IGKV1D-17A0A075B6S4 117 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 DEFB108AA8MXU0 73 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 ZG16O60844 167 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 ZNF205O95201 554 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 DUS4LO95620 317 aaKnown RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 CTSDP07339 412 aaPredicted RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 PI3P19957 117 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 RBMXP38159 391 aaKnown RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 NKX2-5P52952 324 aaPredicted RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 SEC61A1P61619 476 aaKnown RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 HLA-DRB3P79483 266 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 CCL8P80075 99 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 HERPUD1Q15011 391 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 SLC35E4Q6ICL7 350 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 NOXA1Q86UR1 476 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 BOLLQ8N9W6 283 aaKnown RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 UXS1Q8NBZ7 420 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 OR5T2Q8NGG2 359 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 ZFAND1Q8TCF1 268 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 FAM222BQ8WU58 562 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 MITD1Q8WV92 249 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 ITLN2Q8WWU7 325 aaPredicted RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 TMEM230Q96A57 120 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 MOB3AQ96BX8 217 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 TMEM204Q9BSN7 226 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 EGLN1Q9GZT9 426 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 MBNL3Q9NUK0 354 aaKnown RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 CISD1Q9NZ45 108 aaKnown RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 SLC23A1Q9UHI7 598 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 TRAPPC2LQ9UL33 140 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 PCDHB10Q9UN67 800 aa11.96□□□□□ -0.49
USP39-207ENST00000450066 C14orf166Q9Y224 244 aaKnown RBP11.96□□□□□ -0.49
USP39-207ENST00000450066 IGKV1-6A0A0C4DH72 117 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 TMEM30CPA0ZSE6 113 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 B9A039 149 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 PLAUP00749 431 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 ZNF728P0DKX0 622 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 VAMP1P23763 118 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 OR3A1P47881 315 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 UCP3P55916 312 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 PAX5Q02548 391 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 MST1LQ2TV78 715 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 LILRB1Q8NHL6 650 aaPredicted RBP11.96□□□□□ -0.5
USP39-207ENST00000450066 FXYD6Q9H0Q3 95 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 MS4A5Q9H3V2 200 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 DLL4Q9NR61 685 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 METRNQ9UJH8 293 aa11.96□□□□□ -0.5
USP39-207ENST00000450066 BET1O15155 118 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 OR2A4O95047 310 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 PPYP01298 95 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 AADACP22760 399 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 NFYAP23511 347 aaPredicted RBP11.95□□□□□ -0.5
USP39-207ENST00000450066 LOXP28300 417 aaPredicted RBP11.95□□□□□ -0.5
USP39-207ENST00000450066 CD34P28906 385 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 ZNF672Q499Z4 452 aaPredicted RBP11.95□□□□□ -0.5
USP39-207ENST00000450066 C5orf24Q7Z6I8 188 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 ZCCHC24Q8N2G6 241 aaKnown RBP11.95□□□□□ -0.5
USP39-207ENST00000450066 OR2A7Q96R45 310 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 PHB2Q99623 299 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 CABLES2Q9BTV7 478 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 SHARPINQ9H0F6 387 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 CACNA1BQ00975 2339 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 LRRC30A6NM36 301 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 ZNF737O75373 536 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 SLC22A5O76082 557 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 TFF1P04155 84 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 GIPP09681 153 aaPredicted RBP11.95□□□□□ -0.5
USP39-207ENST00000450066 IRF2P14316 349 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 GZMKP49863 264 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 HERV-K104P61576 105 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 C2orf68Q2NKX9 166 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 NLRC3Q7RTR2 1065 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 ASCC1Q8N9N2 400 aaKnown RBP11.95□□□□□ -0.5
USP39-207ENST00000450066 TOMM40LQ969M1 308 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 PIK3IP1Q96FE7 263 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 COQ2Q96H96 371 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 CNTNAP3BQ96NU0 1288 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 CNTNAP3Q9BZ76 1288 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 CLEC4MQ9H2X3 399 aaPredicted RBP11.95□□□□□ -0.5
USP39-207ENST00000450066 SAP30LQ9HAJ7 183 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 DYNLRB1Q9NP97 96 aa11.95□□□□□ -0.5
USP39-207ENST00000450066 HCFC1P51610 2035 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 IGHV3OR15-7A0A075B7D8 119 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 TRBV6-7A0A0A0MS04 114 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 SMLR1H3BR10 107 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 GOSR2O14653 212 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 TUSC2O75896 110 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 SFT2D2O95562 160 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 DIRAS3O95661 229 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 ERP29P30040 261 aaKnown RBP11.94□□□□□ -0.5
USP39-207ENST00000450066 H2BFSP57053 126 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 FXYD4P59646 89 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 SUPT4H1P63272 117 aaKnown RBP11.94□□□□□ -0.5
USP39-207ENST00000450066 AESQ08117 197 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 SLC38A6Q8IZM9 456 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 ANGPTL6Q8NI99 470 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms