RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 TMEM59Q9BXS4 323 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 TMEM133Q9H2Q1 129 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 ZMAT3Q9HA38 289 aaKnown RBP15.18■□□□□ 0.02
SHH-203ENST00000435425 SPACA1Q9HBV2 294 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 STUB1Q9UNE7 303 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 TMEM30CPA0ZSE6 113 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 UBE2QL1A1L167 161 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 BPNT1O95861 308 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 RNASE1P07998 156 aaKnown RBP15.17■□□□□ 0.02
SHH-203ENST00000435425 ARSBP15848 533 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 NFYBP25208 207 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 IER3P46695 156 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 OR10A3P58181 314 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 RBM39Q14498 530 aaKnown RBP15.17■□□□□ 0.02
SHH-203ENST00000435425 NKAPLQ5M9Q1 402 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 SYT6Q5T7P8 510 aaPredicted RBP15.17■□□□□ 0.02
SHH-203ENST00000435425 HEPN1Q6WQI6 88 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 OR51D1Q8NGF3 324 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 RFESDQ8TAC1 157 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 SSMEM1Q8WWF3 244 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 TAF15Q92804 592 aaKnown RBP eCLIP15.17■□□□□ 0.02
SHH-203ENST00000435425 GCDHQ92947 438 aaPredicted RBP15.17■□□□□ 0.02
SHH-203ENST00000435425 OR51E2Q9H255 320 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 TXNL4BQ9NX01 149 aaKnown RBP15.17■□□□□ 0.02
SHH-203ENST00000435425 ETAA1Q9NY74 926 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 CALYQ9NYX4 217 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 ZNRD1Q9P1U0 126 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 SSR3Q9UNL2 185 aa15.17■□□□□ 0.02
SHH-203ENST00000435425 A0A087WXM4 84 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 IGHV2-26A0A0B4J1V2 119 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 TRAV1-2A0A0B4J238 106 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 KBTBD11-OT1A0A1B0GTJ5 212 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 SMIM30A4D0T7 59 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A10PA6NDY2 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A18PA6NE21 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A16PA6NEW6 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A20PA6NIJ5 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A8PA6NJQ4 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A7PA6NKC0 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A22PA8MWA6 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A12PA8MX19 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A5PA8MXJ8 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A23PA8MXZ1 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 CLDN34H7C241 214 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A15PP0C7V4 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A13PP0C7W8 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A14PP0C7W9 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FAM90A24PP0C7X0 464 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 RAB3BP20337 219 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 FUT3P21217 361 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 PSMD7P51665 324 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 RPS27AP62979 156 aaKnown RBP15.16■□□□□ 0.02
SHH-203ENST00000435425 UNC119Q13432 240 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 PLA1AQ53H76 456 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 SIGIRRQ6IA17 410 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 OR52W1Q6IF63 320 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 C16orf87Q6PH81 154 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 LDLRAD3Q86YD5 345 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 ABHD12Q8N2K0 398 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 OR11H6Q8NGC7 330 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 DYRK2Q92630 601 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 NICN1Q9BSH3 213 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 CLEC7AQ9BXN2 247 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 CHIAQ9BZP6 476 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 DPAGT1Q9H3H5 408 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 NCOR1P1Q9H4R4 102 aa15.16■□□□□ 0.02
SHH-203ENST00000435425 RCC2Q9P258 522 aaKnown RBP15.16■□□□□ 0.02
SHH-203ENST00000435425 TMEM14DPA8MWL7 114 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 AIPO00170 330 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 CGB3P0DN86 165 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 CGB7P0DN87 165 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 CD36P16671 472 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 GALP22466 123 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 QRFPP83859 136 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 C2orf76Q3KRA6 126 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 ZNF626Q68DY1 528 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 BEND2Q8NDZ0 799 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 OR4K15Q8NH41 348 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 UBALD1Q8TB05 177 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 NDNFQ8TB73 568 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 FAM3DQ96BQ1 224 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 AJUBAQ96IF1 538 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 NEDD4LQ96PU5 975 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 CHCHD6Q9BRQ6 235 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 IDI2-AS1Q9NZ38 188 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 POMT1Q9Y6A1 747 aa15.15■□□□□ 0.02
SHH-203ENST00000435425 LOC100506127A0A0U1RQW1 187 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 BTBD17A6NE02 478 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 ODF3BA8MYP8 253 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 PDCD6O75340 191 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 IGHV3-7P01780 117 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 MT-ND4P03905 459 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 GADD45AP24522 165 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 SSTR5P35346 364 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 PAX5Q02548 391 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 ZNF497Q6ZNH5 498 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 OR2W3Q7Z3T1 314 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 TMEM86BQ8N661 226 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 SPATA3Q8NHX4 192 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 SSX3Q99909 188 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms