RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TMEM212A6NML5 194 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 IL1AP01583 271 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 IGKV1D-33P01593 117 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 IGKV1-33P01594 117 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 RPSAP08865 295 aaKnown RBP9.15□□□□□ -0.94
USP4-204ENST00000416417 RSU1Q15404 277 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 SMN1Q16637 294 aaKnown RBP9.15□□□□□ -0.94
USP4-204ENST00000416417 CCDC144NLQ6NUI1 221 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 C8orf86Q6ZUL3 223 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 MRPL41Q8IXM3 137 aaKnown RBP9.15□□□□□ -0.94
USP4-204ENST00000416417 SYS1Q8N2H4 156 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 C5orf56Q8N8D9 126 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 RHOXF1Q8NHV9 184 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 CREB3L1Q96BA8 519 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 CYYR1Q96J86 154 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 RHOFQ9HBH0 211 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 ING4Q9UNL4 249 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 ZNF281Q9Y2X9 895 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 COL7A1Q02388 2944 aa9.15□□□□□ -0.94
USP4-204ENST00000416417 IGHV3-43A0A0B4J1X8 118 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 SERPINE3A8MV23 424 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 OOSP1A8MZH6 123 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 IGHV3-43DP0DP04 118 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 RAB3AP20336 220 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 C21orf33P30042 268 aaPredicted RBP9.15□□□□□ -0.95
USP4-204ENST00000416417 GBX2P52951 348 aaPredicted RBP9.15□□□□□ -0.95
USP4-204ENST00000416417 RPL23AP62750 156 aaKnown RBP9.15□□□□□ -0.95
USP4-204ENST00000416417 ELP2Q6IA86 826 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 LCNL1Q6ZST4 164 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 ZNF565Q8N9K5 539 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 SUMF2Q8NBJ7 301 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 OR13C5Q8NGS8 318 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 CCDC107Q8WV48 283 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 APH1BQ8WW43 257 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 MRPL48Q96GC5 212 aaKnown RBP9.15□□□□□ -0.95
USP4-204ENST00000416417 RCC1LQ96I51 464 aaKnown RBP9.15□□□□□ -0.95
USP4-204ENST00000416417 BARHL1Q9BZE3 327 aa9.15□□□□□ -0.95
USP4-204ENST00000416417 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.15□□□□□ -0.95
USP4-204ENST00000416417 AMMECR1Q9Y4X0 333 aaPredicted RBP9.15□□□□□ -0.95
USP4-204ENST00000416417 SIRT4Q9Y6E7 314 aaPredicted RBP9.15□□□□□ -0.95
USP4-204ENST00000416417 A0A1W2PP11 408 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 SNTNA6NMZ2 147 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 NUDT19A8MXV4 375 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 NPIPB11E5RHQ5 1161 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 MAGEB3O15480 346 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 FADS2O95864 444 aaKnown RBP9.14□□□□□ -0.95
USP4-204ENST00000416417 LIMS3P0CW19 117 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 LIMS4P0CW20 117 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 ETV1P50549 477 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 MADCAM1Q13477 382 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 OR2G6Q5TZ20 316 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 ZNF529Q6P280 563 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 OR2W3Q7Z3T1 314 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 MOB3BQ86TA1 216 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 THNSL2Q86YJ6 484 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 KLHL30-AS1Q8NEE0 82 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 PXT1Q8NFP0 134 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 OR10X1Q8NGY0 326 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 DPCDQ9BVM2 203 aaPredicted RBP9.14□□□□□ -0.95
USP4-204ENST00000416417 JAM3Q9BX67 310 aa9.14□□□□□ -0.95
USP4-204ENST00000416417 M0QZK8 103 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 HSD17B6O14756 317 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 GEMIN2O14893 280 aaKnown RBP9.13□□□□□ -0.95
USP4-204ENST00000416417 OR7C1O76099 320 aaPredicted RBP9.13□□□□□ -0.95
USP4-204ENST00000416417 CLIC3O95833 236 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 SERPINA2P20848 420 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 THBS3P49746 956 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 RAB40BQ12829 278 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 IL13RA2Q14627 380 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 VAX1Q5SQQ9 334 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 FAM118AQ9NWS6 357 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 ST3GAL6Q9Y274 331 aa9.13□□□□□ -0.95
USP4-204ENST00000416417 IGHV1-3A0A0C4DH29 117 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 LOC100130705A0A1B0GUX0 176 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 MAGEA13PA6NCF6 341 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 NCBP2LA6PVI3 153 aaKnown RBP9.12□□□□□ -0.95
USP4-204ENST00000416417 ZNF736B4DX44 427 aaPredicted RBP9.12□□□□□ -0.95
USP4-204ENST00000416417 CCRL2O00421 344 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 SLC31A2O15432 143 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 VSIG8P0DPA2 414 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 RBM11P57052 281 aaKnown RBP9.12□□□□□ -0.95
USP4-204ENST00000416417 RAB25P57735 213 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 EGFEM1PQ0D2K5 195 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 DEFB136Q30KP8 78 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 ATAD3CQ5T2N8 411 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 DDI2Q5TDH0 399 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 ASCL4Q6XD76 172 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 C5orf24Q7Z6I8 188 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 SLC35E3Q7Z769 313 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 ZFP41Q8N8Y5 198 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 OR52N1Q8NH53 320 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 HAVCR2Q8TDQ0 301 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 GPR148Q8TDV2 347 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 ARL11Q969Q4 196 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 TMEM106AQ96A25 262 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 Q96MT0 163 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 METTL9Q9H1A3 318 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 LINC00574Q9H8X3 128 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 PCDHB16Q9NRJ7 776 aa9.12□□□□□ -0.95
USP4-204ENST00000416417 NBEAL2Q6ZNJ1 2754 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms