RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ZNF818PQ6ZRF7 136 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 OR4A4PQ8NGN8 299 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 BARX1Q9HBU1 254 aaPredicted RBP17.06■□□□□ 0.32
USP39-204ENST00000409766 PCDHB10Q9UN67 800 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 NXPH2O95156 264 aa17.05■□□□□ 0.32
USP39-204ENST00000409766 HKR1P10072 659 aa17.05■□□□□ 0.32
USP39-204ENST00000409766 MDH2P40926 338 aaKnown RBP17.05■□□□□ 0.32
USP39-204ENST00000409766 HLA-DRB3P79483 266 aa17.05■□□□□ 0.32
USP39-204ENST00000409766 BAP18Q8IXM2 172 aa17.05■□□□□ 0.32
USP39-204ENST00000409766 FAM169BQ8N8A8 192 aa17.05■□□□□ 0.32
USP39-204ENST00000409766 ZNF565Q8N9K5 539 aa17.05■□□□□ 0.32
USP39-204ENST00000409766 SLX1AQ9BQ83 275 aa17.05■□□□□ 0.32
USP39-204ENST00000409766 BCL2L14Q9BZR8 327 aa17.05■□□□□ 0.32
USP39-204ENST00000409766 IGHV2OR16-5A0A0B4J2B6 119 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 A8MXK9 166 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 TEX46H3BTG2 121 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 GPR31O00270 319 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 CRYABP02511 175 aaKnown RBP17.04■□□□□ 0.32
USP39-204ENST00000409766 FGF2P09038 288 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 KITLGP21583 273 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 SHEQ5VZ18 495 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 HSD17B13Q7Z5P4 300 aaPredicted RBP17.04■□□□□ 0.32
USP39-204ENST00000409766 TBC1D26Q86UD7 250 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 GAPTQ8N292 157 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 TMEM222Q9H0R3 208 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 FBXO9Q9UK97 447 aaPredicted RBP17.04■□□□□ 0.32
USP39-204ENST00000409766 SLC25A15Q9Y619 301 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 SIRPB1O00241 398 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 MBPP02686 304 aaPredicted RBP17.04■□□□□ 0.32
USP39-204ENST00000409766 SPIN3Q5JUX0 258 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 ZNF497Q6ZNH5 498 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 RPRMLQ8N4K4 120 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 EIF4E3Q8N5X7 224 aaKnown RBP17.04■□□□□ 0.32
USP39-204ENST00000409766 PLPPR1Q8TBJ4 325 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 CABLES2Q9BTV7 478 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 HES4Q9HCC6 221 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 AMDHD2Q9Y303 409 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 TMED3Q9Y3Q3 217 aa17.04■□□□□ 0.32
USP39-204ENST00000409766 PTPRZ1P23471 2315 aaPredicted RBP17.04■□□□□ 0.32
USP39-204ENST00000409766 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.03■□□□□ 0.32
USP39-204ENST00000409766 SRPXP78539 464 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 NHLH1Q02575 133 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 SMCO1Q147U7 214 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 ZNF324BQ6AW86 544 aaPredicted RBP17.03■□□□□ 0.32
USP39-204ENST00000409766 C11orf53Q8IXP5 236 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 SLC35G3Q8N808 338 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 LUZP4Q9P127 313 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 LSM5Q9Y4Y9 91 aaKnown RBP17.03■□□□□ 0.32
USP39-204ENST00000409766 HEATR1Q9H583 2144 aaKnown RBP17.03■□□□□ 0.32
USP39-204ENST00000409766 A0A1B0GW55 424 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 SH2D1BO14796 132 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 DUX4L2P0CJ85 424 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 DUX4L3P0CJ86 424 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 DUX4L4P0CJ87 422 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 DUX4L5P0CJ88 424 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 DUX4L6P0CJ89 424 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 DUX4L7P0CJ90 424 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 FABP6P51161 128 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 EIF2S3LQ2VIR3 472 aaKnown RBP17.03■□□□□ 0.32
USP39-204ENST00000409766 ZNF718Q3SXZ3 478 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 C1orf185Q5T7R7 199 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 MEX3BQ6ZN04 569 aaKnown RBP17.03■□□□□ 0.32
USP39-204ENST00000409766 Q6ZR03 302 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 BVESQ8NE79 360 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 OR10J5Q8NHC4 309 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 TMEM56Q96MV1 263 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 USB1Q9BQ65 265 aaKnown RBP17.03■□□□□ 0.32
USP39-204ENST00000409766 CXXC4Q9H2H0 198 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 CCL28Q9NRJ3 127 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 DUX4Q9UBX2 424 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 FZR1Q9UM11 496 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 SESN1Q9Y6P5 492 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 TMEM56-RWDD3S4R434 201 aa17.03■□□□□ 0.32
USP39-204ENST00000409766 C1QTNF9BB2RNN3 333 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 K7EPK0 472 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 TIMM8AO60220 97 aaPredicted RBP17.02■□□□□ 0.32
USP39-204ENST00000409766 SCGB1D2O95969 90 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 RPL12P30050 165 aaKnown RBP17.02■□□□□ 0.32
USP39-204ENST00000409766 MBNL2Q5VZF2 373 aaKnown RBP17.02■□□□□ 0.32
USP39-204ENST00000409766 TMEM268Q5VZI3 342 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 ZNF474Q6S9Z5 364 aaPredicted RBP17.02■□□□□ 0.32
USP39-204ENST00000409766 MOB1BQ7L9L4 216 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 C1orf174Q8IYL3 243 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 H1FOOQ8IZA3 346 aaPredicted RBP17.02■□□□□ 0.32
USP39-204ENST00000409766 FAM71E2Q8N5Q1 922 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 OR52M1Q8NGK5 317 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 KIRREL1Q96J84 757 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 DNTTIP1Q9H147 329 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 WASF3Q9UPY6 502 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 OR2W1Q9Y3N9 320 aa17.02■□□□□ 0.32
USP39-204ENST00000409766 ANKRD11Q6UB99 2663 aaPredicted RBP17.01■□□□□ 0.31
USP39-204ENST00000409766 TAAR5O14804 337 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 TIMP3P35625 211 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 LRRC20Q8TCA0 184 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 TLNRD1Q9H1K6 362 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 NPIPB11E5RHQ5 1161 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 HSD17B6O14756 317 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 ZP3P21754 424 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 ZNF826PQ6ZT77 177 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 LINC00052Q96N35 136 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms