RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MPPED1O15442 326 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 IGHEP01854 428 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 ARG1P05089 322 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 FAM157CP0CG43 387 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 NKX2-1P43699 371 aaPredicted RBP11.47□□□□□ -0.57
VPS54-203ENST00000409558 LINC00205P59089 165 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 PJVKQ0ZLH3 352 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 ARL6IP1Q15041 203 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 LIAT1Q6ZQX7 453 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 IGHV3-43A0A0B4J1X8 118 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 SLC22A20A6NK97 555 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 IGHV3-43DP0DP04 118 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 CD59P13987 128 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 SLC30A7Q8NEW0 376 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 DNTTIP1Q9H147 329 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 SPACA1Q9HBV2 294 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 MSL2Q9HCI7 577 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 SP1P08047 785 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 PPP1CCP36873 323 aaKnown RBP11.46□□□□□ -0.57
VPS54-203ENST00000409558 WNT5AP41221 380 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 UBE2NP61088 152 aaKnown RBP11.46□□□□□ -0.57
VPS54-203ENST00000409558 ZNF154Q13106 437 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 SUMF2Q8NBJ7 301 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 SH3BGRL2Q9UJC5 107 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 URGCP-MRPS24S4R325 110 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 H0YL77 283 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 WNT9BO14905 357 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 BEND4Q6ZU67 534 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 OR10Z1Q8NGY1 313 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 C14orf79Q96F83 325 aa11.46□□□□□ -0.57
VPS54-203ENST00000409558 COL5A1P20908 1838 aaPredicted RBP11.46□□□□□ -0.57
VPS54-203ENST00000409558 DEGS1O15121 323 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 NXPH2O95156 264 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 SERPINE2P07093 398 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 MST1LQ2TV78 715 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 EIF5AL1Q6IS14 154 aaKnown RBP11.46□□□□□ -0.58
VPS54-203ENST00000409558 AQP10Q96PS8 301 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 TRGV5A0A0B4J1U4 118 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 ZNF766Q5HY98 468 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 CLRN3Q8NCR9 226 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 OR5C1Q8NGR4 320 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 APOBEC3DQ96AK3 386 aaPredicted RBP11.46□□□□□ -0.58
VPS54-203ENST00000409558 PHYHIPLQ96FC7 376 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 RARRES2Q99969 163 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 DUSP13Q9UII6 198 aa11.46□□□□□ -0.58
VPS54-203ENST00000409558 ANKRD11Q6UB99 2663 aaPredicted RBP11.45□□□□□ -0.58
VPS54-203ENST00000409558 TRIM77I1YAP6 450 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 CD46P15529 392 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 KCNJ3P48549 501 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 EDDM3AQ14507 147 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 HERPUD1Q15011 391 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 DHRS11Q6UWP2 260 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 OR2G3Q8NGZ4 309 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 TXNL1O43396 289 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 IP6K3Q96PC2 410 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 NRIP2Q9BQI9 281 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 BORCS7-ASMTA0A0B4J1R7 106 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 KLRC4-KLRK1H3BQV0 150 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 CST4P01036 141 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 GLAP06280 429 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 RGCCQ9H4X1 137 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 CDH20Q9HBT6 801 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 FAM86C1Q9NVL1 165 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 EDARQ9UNE0 448 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 ATRXP46100 2492 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 AKAP13Q12802 2813 aa11.45□□□□□ -0.58
VPS54-203ENST00000409558 PSG2P11465 335 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 MPZP25189 248 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 F2RL1P55085 397 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 FOXL2NBQ6ZUU3 175 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 CCDC71LQ8N9Z2 235 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 OR1J1Q8NGS3 322 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 ADAMTS17Q8TE56 1095 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 SPRR3Q9UBC9 169 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 E5RGE8 158 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 CHST1O43916 411 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 OR2B8PP59922 312 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 OR10J5Q8NHC4 309 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 REPIN1Q9BWE0 567 aaKnown RBP11.44□□□□□ -0.58
VPS54-203ENST00000409558 MMP26Q9NRE1 261 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 ZDHHC8Q9ULC8 765 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 NSG2Q9Y328 171 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 SNAPC5O75971 98 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 BMP5P22003 454 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 OR8B8Q15620 311 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 SHEQ5VZ18 495 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 BTNL3Q6UXE8 466 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 OR10V1Q8NGI7 309 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 IGKV1-6A0A0C4DH72 117 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 SOX15O60248 233 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 JTBO76095 146 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 ALDH3B1P43353 468 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 FAM58AQ8N1B3 248 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 SFT2D1Q8WV19 159 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 MSI2Q96DH6 328 aaKnown RBP11.44□□□□□ -0.58
VPS54-203ENST00000409558 CLCC1Q96S66 551 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 C1QTNF5Q9BXJ0 243 aa11.44□□□□□ -0.58
VPS54-203ENST00000409558 IL18BPO95998 194 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 PEA15Q15121 130 aa11.43□□□□□ -0.58
VPS54-203ENST00000409558 RIPPLY2Q5TAB7 128 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms