RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CD99P14209 185 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 GNB3P16520 340 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 HIST1H1TP22492 207 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-204ENST00000399489 S100A7P31151 101 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 OR3A4PP47883 348 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 NDUFA8P51970 172 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 C1QTNF8P60827 252 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 RPS21P63220 83 aaKnown RBP3.14□□□□□ -1.91
HMGB1-204ENST00000399489 PRDX1Q06830 199 aaKnown RBP3.14□□□□□ -1.91
HMGB1-204ENST00000399489 SMAGPQ0VAQ4 97 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 FZD2Q14332 565 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 GINS1Q14691 196 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 SURF2Q15527 256 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-204ENST00000399489 HIST2H3PS2Q5TEC6 136 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 LEMD1Q68G75 181 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 C19orf48Q6RUI8 117 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 SMARCD3Q6STE5 483 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 DNM1P46Q6ZS02 220 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 RASSF6Q6ZTQ3 369 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 NOTCH2NLQ7Z3S9 236 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 CATSPER3Q86XQ3 398 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 FAM71E2Q8N5Q1 922 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF676Q8N7Q3 588 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 OR6T1Q8NGN1 323 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 OR9Q1Q8NGQ5 310 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 LRRC29Q8WV35 223 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 C1orf54Q8WWF1 131 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 FAM3DQ96BQ1 224 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 SERPINI1Q99574 410 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 TBX5Q99593 518 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 GGACTQ9BVM4 153 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 FBXL15Q9H469 300 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 FAM96AQ9H5X1 160 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 ENY2Q9NPA8 101 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 SLC7A10Q9NS82 523 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 RASL12Q9NYN1 266 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 OPTCQ9UBM4 332 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF629Q9UEG4 869 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-204ENST00000399489 PRO0628Q9UI54 55 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.14□□□□□ -1.91
HMGB1-204ENST00000399489 PYGO1Q9Y3Y4 419 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 LSM5Q9Y4Y9 91 aaKnown RBP3.14□□□□□ -1.91
HMGB1-204ENST00000399489 ORC6Q9Y5N6 252 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 KIF15Q9NS87 1388 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 SPHKAPQ2M3C7 1700 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 KIF26BQ2KJY2 2108 aa3.14□□□□□ -1.91
HMGB1-204ENST00000399489 CACNA1FO60840 1977 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 IGLV4-3A0A075B6K6 122 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TRAV9-2A0A087WT02 112 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 A0A087WUJ7 227 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 IGHV7-81A0A0B4J1V7 117 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 IGSF23A1L1A6 192 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 C9orf170A2RU37 121 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 RBFOX3A6NFN3 312 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 C5orf58C9J3I9 102 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 H0Y9J4 135 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 MANBAO00462 879 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 FGF17O60258 216 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 CCDC22O60826 627 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 CA11O75493 328 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 BANF1O75531 89 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 ATG12O94817 140 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 GPR75O95800 540 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 BPGMP07738 259 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 MMP7P09237 267 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 OR13C7P0DN81 318 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TAC1P20366 129 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 VEGFCP49767 419 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 MTPNP58546 118 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 DNAJB13P59910 316 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 GRK1Q15835 563 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 ADAMTSL4-AS1Q5T5F5 129 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SAMD13Q5VXD3 122 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 FBXW9Q5XUX1 488 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 LAMTOR1Q6IAA8 161 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TNFAIP8L2Q6P589 184 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SPNS3Q6ZMD2 512 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 FAM183BPQ6ZVS7 135 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 GLT6D1Q7Z4J2 308 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 CADM2Q8N3J6 435 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 ARIH2OSQ8N7S6 290 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 NKAPP1Q8N9T2 125 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 OR13C6PQ8NH95 151 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 NEIL3Q8TAT5 605 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SLC37A2Q8TED4 501 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SRSF12Q8WXF0 261 aaKnown RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 RGP1Q92546 391 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 FCRL1Q96LA6 429 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 PITX2Q99697 317 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 ZBP1Q9H171 429 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 WFDC1Q9HC57 220 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 UTP11Q9Y3A2 253 aaKnown RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 A0A1W2PP64 1363 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 RPRD2Q5VT52 1461 aaKnown RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 XRN1Q8IZH2 1706 aaKnown RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 RLFQ13129 1914 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 GREB1LQ9C091 1923 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 RALGAPA1Q6GYQ0 2036 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 BTNL10A8MVZ5 291 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SAP18O00422 153 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms