RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 DCAF7P61962 342 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 C17orf67Q0P5P2 114 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 KIR2DS1Q14954 304 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 TRIM61Q5EBN2 209 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 NUFIP2Q7Z417 695 aaKnown RBP8.15□□□□□ -1.11
COL28A1-201ENST00000399429 GAPTQ8N292 157 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 OR10S1Q8NGN2 331 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 OR10G8Q8NGN5 311 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 CLDND2Q8NHS1 167 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 NANOS1Q8WY41 292 aaKnown RBP8.15□□□□□ -1.11
COL28A1-201ENST00000399429 BOD1Q96IK1 185 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 LPAR2Q9HBW0 351 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 KCNIP1Q9NZI2 227 aa8.15□□□□□ -1.11
COL28A1-201ENST00000399429 APC2O95996 2303 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 HEATR5AQ86XA9 2040 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 MED12Q93074 2177 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 COL4A5P29400 1685 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 A0A1B0GU03 582 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 CYR61O00622 381 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 RRP8O43159 456 aaKnown RBP8.14□□□□□ -1.11
COL28A1-201ENST00000399429 CBR3O75828 277 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 USF1P22415 310 aaPredicted RBP8.14□□□□□ -1.11
COL28A1-201ENST00000399429 PEBP1P30086 187 aaKnown RBP8.14□□□□□ -1.11
COL28A1-201ENST00000399429 RAB30Q15771 203 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 C9orf135Q5VTT2 229 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 CDCP2Q5VXM1 449 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 RNASEKQ6P5S7 137 aaKnown RBP8.14□□□□□ -1.11
COL28A1-201ENST00000399429 MRPL21Q7Z2W9 205 aaKnown RBP8.14□□□□□ -1.11
COL28A1-201ENST00000399429 ZNF573Q86YE8 665 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 SLC37A2Q8TED4 501 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 PP6455Q8WZ26 134 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 COX14Q96I36 57 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 DEFB126Q9BYW3 111 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 WNT10AQ9GZT5 417 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 OR6C3Q9NZP0 311 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 TUBD1Q9UJT1 453 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 DOCK9Q9BZ29 2069 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 TMEM14DPA8MWL7 114 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 K7N7A8 449 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 IGHEP01854 428 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 PRAMEF20Q5VT98 475 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 RNF133Q8WVZ7 376 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 SDF2L1Q9HCN8 221 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 RNF186Q9NXI6 227 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 SERGEFQ9UGK8 458 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 TRDCB7Z8K6 153 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 GCH1P30793 250 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 FOXK1P85037 733 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 ZNF77Q15935 545 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 C1orf194Q5T5A4 169 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 OR1L6Q8NGR2 347 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 PARLQ9H300 379 aa8.14□□□□□ -1.11
COL28A1-201ENST00000399429 HEYLQ9NQ87 328 aaPredicted RBP8.14□□□□□ -1.11
COL28A1-201ENST00000399429 SCN5AQ14524 2016 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 CASP8AP2Q9UKL3 1982 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 SYNGR2O43760 224 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 LYPD3O95274 346 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 BTF3P20290 206 aaKnown RBP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 MYBPHQ13203 477 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 KIAA1644Q3SXP7 199 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 SFTPA1Q8IWL2 248 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 PAQR4Q8N4S7 273 aaPredicted RBP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 OR5D13Q8NGL4 314 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 GAL3ST2Q9H3Q3 398 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 TMEM74BQ9NUR3 256 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 CISD1Q9NZ45 108 aaKnown RBP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 DOCK11Q5JSL3 2073 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 SIRPB1O00241 398 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 SELEP16581 610 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 PPP1CAP62136 330 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 LTC4SQ16873 150 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 IZUMO4Q1ZYL8 232 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 TIGITQ495A1 244 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 DCAF10Q5QP82 559 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 LDLRAD2Q5SZI1 272 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 S100A7AQ86SG5 101 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 CADM4Q8NFZ8 388 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 SP7Q8TDD2 431 aaPredicted RBP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 IMMP2LQ96T52 175 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 WDR61Q9GZS3 305 aaKnown RBP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 G6PC2Q9NQR9 355 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 SLC7A10Q9NS82 523 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 ERRFI1Q9UJM3 462 aaPredicted RBP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 CHD3Q12873 2000 aaKnown RBP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 C17orf51A8MQB3 221 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 M0R1X1 148 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 EML2O95834 649 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 ERGP11308 486 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 PIGYQ3MUY2 71 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 MRGPRX4Q96LA9 322 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 FAM234AQ9H0X4 552 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 CCL28Q9NRJ3 127 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 CUTCQ9NTM9 273 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 PPIAL4AQ9Y536 164 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 COL16A1Q07092 1604 aaPredicted RBP8.13□□□□□ -1.11
COL28A1-201ENST00000399429 SVILO95425 2214 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 SIP14410 1827 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 DOCK3Q8IZD9 2030 aa8.13□□□□□ -1.11
COL28A1-201ENST00000399429 BLACEA4D250 179 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms