RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 OR2F1Q13607 317 aa21.29■■□□□ 1
SHOX2-201ENST00000389589 EXOSC2Q13868 293 aaKnown RBP21.29■■□□□ 1
SHOX2-201ENST00000389589 MSMPQ1L6U9 139 aa21.29■■□□□ 1
SHOX2-201ENST00000389589 PHLDA2Q53GA4 152 aa21.29■■□□□ 1
SHOX2-201ENST00000389589 ACP7Q6ZNF0 438 aa21.29■■□□□ 1
SHOX2-201ENST00000389589 OR2Z1Q8NG97 314 aa21.29■■□□□ 1
SHOX2-201ENST00000389589 MEMO1Q9Y316 297 aa21.29■■□□□ 1
SHOX2-201ENST00000389589 CHD3Q12873 2000 aaKnown RBP21.29■■□□□ 1
SHOX2-201ENST00000389589 CCKARP32238 428 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 ZNF565Q8N9K5 539 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 CABLES2Q9BTV7 478 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 IGLV3-9A0A075B6K5 115 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 IGKV1-6A0A0C4DH72 117 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 PTBP3O95758 552 aaKnown RBP21.28■■□□□ 1
SHOX2-201ENST00000389589 IFNA21P01568 189 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 HOXB5P09067 269 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 RCC1P18754 421 aaPredicted RBP21.28■■□□□ 1
SHOX2-201ENST00000389589 CD40P25942 277 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 TMEM187Q14656 261 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 LRP11Q86VZ4 500 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 RELL2Q8NC24 303 aaPredicted RBP21.28■■□□□ 1
SHOX2-201ENST00000389589 PRR7Q8TB68 274 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 PLPPR1Q8TBJ4 325 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 TMEM171Q8WVE6 324 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 UFSP2Q9NUQ7 469 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 OR14J1Q9UGF5 321 aa21.28■■□□□ 1
SHOX2-201ENST00000389589 ATP6V1G2-DDX39BF2Z307 99 aa21.27■■□□□ 1
SHOX2-201ENST00000389589 SMIM21Q3B7S5 101 aa21.27■■□□□ 1
SHOX2-201ENST00000389589 ACOT7LQ6ZUV0 252 aa21.27■■□□□ 1
SHOX2-201ENST00000389589 KCNRGQ8N5I3 272 aa21.27■■□□□ 1
SHOX2-201ENST00000389589 LRTM2Q8N967 370 aa21.27■■□□□ 1
SHOX2-201ENST00000389589 TAAR3PQ9P1P4 343 aa21.27■■□□□ 1
SHOX2-201ENST00000389589 CADP27708 2225 aa21.27■■□□□ 1
SHOX2-201ENST00000389589 TRBV6-7A0A0A0MS04 114 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 KCNJ3P48549 501 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 SELENOVP59797 346 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 RND3P61587 244 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 PCSK4Q6UW60 755 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 OR10Z1Q8NGY1 313 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 OR10J5Q8NHC4 309 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 OR10C1Q96KK4 312 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 MBD2Q9UBB5 411 aa21.27■□□□□ 0.99
SHOX2-201ENST00000389589 hCG_1807616A0A1W2PRN6 198 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 NPIPB11E5RHQ5 1161 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 WNT9BO14905 357 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 OR5AC1P0C628 307 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 GNRHRP30968 328 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 TMEM108Q6UXF1 575 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 C5orf24Q7Z6I8 188 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 OR8H3Q8N146 312 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 TRAPPC2LQ9UL33 140 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 WIPI2Q9Y4P8 454 aa21.26■□□□□ 0.99
SHOX2-201ENST00000389589 IFNL4K9M1U5 179 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 CFDP00746 253 aaPredicted RBP21.25■□□□□ 0.99
SHOX2-201ENST00000389589 AP2S1P53680 142 aaPredicted RBP21.25■□□□□ 0.99
SHOX2-201ENST00000389589 LIAT1Q6ZQX7 453 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 C22orf34Q6ZV56 151 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 INO80EQ8NBZ0 244 aaPredicted RBP21.25■□□□□ 0.99
SHOX2-201ENST00000389589 SECTM1Q8WVN6 248 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 RND1Q92730 232 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 VKORC1Q9BQB6 163 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 MPTX1A8MV57 137 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 GPR31O00270 319 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 MPPED1O15442 326 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 PET100P0DJ07 73 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 ATXN7L3Q14CW9 347 aaPredicted RBP21.25■□□□□ 0.99
SHOX2-201ENST00000389589 VHLLQ6RSH7 139 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 SLC51BQ86UW2 128 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 NUP37Q8NFH4 326 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 OR11L1Q8NGX0 322 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 KIRREL1Q96J84 757 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 SLC5A7Q9GZV3 580 aa21.25■□□□□ 0.99
SHOX2-201ENST00000389589 MBNL3Q9NUK0 354 aaKnown RBP21.25■□□□□ 0.99
SHOX2-201ENST00000389589 ZSCAN5BA6NJL1 495 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 PTAFRP25105 342 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 IL15RAQ13261 267 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 LDLRAD3Q86YD5 345 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 H1FOOQ8IZA3 346 aaPredicted RBP21.24■□□□□ 0.99
SHOX2-201ENST00000389589 LGI3Q8N145 548 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 LRRC29Q8WV35 223 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 CFHR2P36980 270 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 SRPXP78539 464 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 FBXO9Q9UK97 447 aaPredicted RBP21.24■□□□□ 0.99
SHOX2-201ENST00000389589 OR2W1Q9Y3N9 320 aa21.24■□□□□ 0.99
SHOX2-201ENST00000389589 TMEM30CPA0ZSE6 113 aa21.23■□□□□ 0.99
SHOX2-201ENST00000389589 LYL1P12980 280 aa21.23■□□□□ 0.99
SHOX2-201ENST00000389589 KLRB1Q12918 225 aa21.23■□□□□ 0.99
SHOX2-201ENST00000389589 SP6Q3SY56 376 aa21.23■□□□□ 0.99
SHOX2-201ENST00000389589 GGNBP1Q5YKI7 109 aa21.23■□□□□ 0.99
SHOX2-201ENST00000389589 PRSS54Q6PEW0 395 aa21.23■□□□□ 0.99
SHOX2-201ENST00000389589 FAM90A1Q86YD7 464 aa21.23■□□□□ 0.99
SHOX2-201ENST00000389589 DMRTA2Q96SC8 542 aa21.23■□□□□ 0.99
SHOX2-201ENST00000389589 SPTBN4Q9H254 2564 aa21.22■□□□□ 0.99
SHOX2-201ENST00000389589 KANTRA0A1W2PQU2 76 aa21.22■□□□□ 0.99
SHOX2-201ENST00000389589 RNF222A6NCQ9 220 aa21.22■□□□□ 0.99
SHOX2-201ENST00000389589 CEBPDP49716 269 aaPredicted RBP21.22■□□□□ 0.99
SHOX2-201ENST00000389589 IAH1Q2TAA2 248 aaPredicted RBP21.22■□□□□ 0.99
SHOX2-201ENST00000389589 SLC35E4Q6ICL7 350 aa21.22■□□□□ 0.99
SHOX2-201ENST00000389589 GLYATL2Q8WU03 294 aa21.22■□□□□ 0.99
SHOX2-201ENST00000389589 RNF126Q9BV68 326 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms