RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CFDP00746 253 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ESDP10768 282 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 EIF3IQ13347 325 aaKnown RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 PRSS36Q5K4E3 855 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A42Q86VD7 318 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 OR4X1Q8NH49 305 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM160Q9NX00 188 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 RBPJLQ9UBG7 517 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 PAM16Q9Y3D7 125 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 SLIT1O75093 1534 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 COL5A2P05997 1499 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 OGG1O15527 345 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 S1PR2O95136 353 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TYMSP04818 313 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 CD22P20273 847 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 PTGFRP43088 359 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 FGF8P55075 233 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ERVS71-1P61550 626 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 PDCD1Q15116 288 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 MRPL54Q6P161 138 aaKnown RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 Q6ZSR9 355 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ERASQ7Z444 233 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 CLECL1Q8IZS7 167 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 NRG4Q8WWG1 115 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF707Q96C28 371 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 JMJD8Q96S16 334 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SFXN3Q9BWM7 321 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 CRIM1Q9NZV1 1036 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TNS2Q63HR2 1409 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 PXDNQ92626 1479 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TRAV8-2A0A0B4J237 113 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 A0A0U1RQS6 177 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TCRBV4S1A1TA0A5B7 111 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 LNP1A1A4G5 178 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM189A5PLL7 270 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SNRPGP15A8MWD9 76 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM189-UBE2V1I3L0A0 370 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 FGF5P12034 268 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ASIPP42127 132 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 DYNLT3P51808 116 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 FAM189BP81408 668 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 CHCHD5Q9BSY4 110 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 PAXXQ9BUH6 204 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 CLEC7AQ9BXN2 247 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 BCL2L10Q9HD36 194 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 HCFC1R1Q9NWW0 138 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ST3GAL6Q9Y274 331 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3OR15-7A0A075B7D8 119 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SLC17A3O00476 420 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 APOMO95445 188 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ISG15P05161 165 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SPINK2P20155 84 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 EPHA8P29322 1005 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF117Q03924 483 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 VKORC1L1Q8N0U8 176 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ABHD12Q8N2K0 398 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 OR2L13Q8N349 312 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF485Q8NCK3 441 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 FBXO27Q8NI29 283 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 HAVCR2Q8TDQ0 301 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 FAM3DQ96BQ1 224 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 RNF167Q9H6Y7 350 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 MMP26Q9NRE1 261 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 OCIAD1Q9NX40 245 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 DOCK3Q8IZD9 2030 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TCRBV16S1A1N1A0A5B0 115 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 VENTXO95231 258 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 PLA2G2AP14555 144 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 HIST1H1AQ02539 215 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 LEXMQ3ZCV2 418 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A53Q5H9E4 307 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 STPG3Q8N7X2 389 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 OR6X1Q8NH79 312 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 APOBEC4Q8WW27 367 aaKnown RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TIMM17AQ99595 171 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SOSTQ9BQB4 213 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 FBXL15Q9H469 300 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM74BQ9NUR3 256 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 TRAV17A0A0B4J275 112 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 HMX2A2RU54 273 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 MAP1LC3B2A6NCE7 125 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SPRY1O43609 319 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 SEC11BP0C7V7 166 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 PI3P19957 117 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 CBLN1P23435 193 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 UBE2BP63146 152 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 PSG5Q15238 335 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 COLCA1Q6ZS62 124 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ASCL5Q7RTU5 278 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 COMMD6Q7Z4G1 85 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 MRPL52Q86TS9 123 aaKnown RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 C17orf77Q96MU5 243 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 MAP1LC3BQ9GZQ8 125 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ZMAT4Q9H898 229 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 LYRM4Q9HD34 91 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 COA3Q9Y2R0 106 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-202ENST00000375405 POM121BA6NF01 834 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 FAM159BA6NKW6 160 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 ZP3P21754 424 aa4.12□□□□□ -1.75
SCN1A-202ENST00000375405 CRYBB3P26998 211 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms