RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 MT-ND4P03905 459 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 KIR3DL3Q8N743 410 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 OR13A1Q8NGR1 328 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 DYNC2LI1Q8TCX1 351 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 CCDC107Q8WV48 283 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 KCTD12Q96CX2 325 aaKnown RBP18.19■□□□□ 0.5
SHMT1-203ENST00000354098 COMMD3Q9UBI1 195 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 LPAR3Q9UBY5 353 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 RSL24D1Q9UHA3 163 aaKnown RBP18.19■□□□□ 0.5
SHMT1-203ENST00000354098 HSF4Q9ULV5 492 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 KCNK7Q9Y2U2 307 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 DSCAML1Q8TD84 2053 aa18.19■□□□□ 0.5
SHMT1-203ENST00000354098 TMEM30CPA0ZSE6 113 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 ZNF728P0DKX0 622 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 ZNF182P17025 639 aaPredicted RBP18.18■□□□□ 0.5
SHMT1-203ENST00000354098 VMO1Q7Z5L0 202 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 CMTM4Q8IZR5 234 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 CORO2AQ92828 525 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 RAB3CQ96E17 227 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 ZNF714Q96N38 554 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 ZMAT3Q9HA38 289 aaKnown RBP18.18■□□□□ 0.5
SHMT1-203ENST00000354098 SIRT7Q9NRC8 400 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 NSD1Q96L73 2696 aaPredicted RBP18.18■□□□□ 0.5
SHMT1-203ENST00000354098 TRGV10A0A0A0MS01 117 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 M0R1W7 72 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 FAM189A2Q15884 450 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 LURAP1LQ8IV03 231 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 SAMD12Q8N8I0 201 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 OR4K15Q8NH41 348 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 UPRTQ96BW1 309 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 NCOR1P1Q9H4R4 102 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 AK3Q9UIJ7 227 aa18.18■□□□□ 0.5
SHMT1-203ENST00000354098 UBE2J1Q9Y385 318 aaPredicted RBP18.18■□□□□ 0.5
SHMT1-203ENST00000354098 ANK3Q12955 4377 aaKnown RBP18.17■□□□□ 0.5
SHMT1-203ENST00000354098 A0A075B6Q4 140 aa18.17■□□□□ 0.5
SHMT1-203ENST00000354098 A0A1W2PPH5 198 aa18.17■□□□□ 0.5
SHMT1-203ENST00000354098 GNB3P16520 340 aa18.17■□□□□ 0.5
SHMT1-203ENST00000354098 GLP1RP43220 463 aa18.17■□□□□ 0.5
SHMT1-203ENST00000354098 KLF17Q5JT82 389 aaPredicted RBP18.17■□□□□ 0.5
SHMT1-203ENST00000354098 C1orf122Q6ZSJ8 110 aa18.17■□□□□ 0.5
SHMT1-203ENST00000354098 GAPTQ8N292 157 aa18.17■□□□□ 0.5
SHMT1-203ENST00000354098 MRGPRDQ8TDS7 321 aa18.17■□□□□ 0.5
SHMT1-203ENST00000354098 OR6C3Q9NZP0 311 aa18.17■□□□□ 0.5
SHMT1-203ENST00000354098 IGHV3OR16-10A0A075B7F0 116 aa18.16■□□□□ 0.5
SHMT1-203ENST00000354098 C17orf98A8MV24 154 aa18.16■□□□□ 0.5
SHMT1-203ENST00000354098 CGB3P0DN86 165 aa18.16■□□□□ 0.5
SHMT1-203ENST00000354098 CGB7P0DN87 165 aa18.16■□□□□ 0.5
SHMT1-203ENST00000354098 ZNF565Q8N9K5 539 aa18.16■□□□□ 0.5
SHMT1-203ENST00000354098 HDHD3Q9BSH5 251 aaPredicted RBP18.16■□□□□ 0.5
SHMT1-203ENST00000354098 ELF5Q9UKW6 265 aaPredicted RBP18.16■□□□□ 0.5
SHMT1-203ENST00000354098 SMIM31A0A1B0GVY4 71 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 MMP23AO75900 390 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 IGHV4-38-2P0DP08 117 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 SOX6P35712 828 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 C17orf58Q2M2W7 97 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 UBE2NLQ5JXB2 153 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 FOXB2Q5VYV0 432 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 PDZD9Q8IXQ8 264 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 DTX3Q8N9I9 347 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 MRPL30Q8TCC3 161 aaKnown RBP18.15■□□□□ 0.5
SHMT1-203ENST00000354098 ACOT12Q8WYK0 555 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 BEX2Q9BXY8 128 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 ABCG5Q9H222 651 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 METTL8Q9H825 291 aaKnown RBP18.15■□□□□ 0.5
SHMT1-203ENST00000354098 FN1P02751 2386 aaKnown RBP18.15■□□□□ 0.5
SHMT1-203ENST00000354098 MFNGO00587 321 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 CA11O75493 328 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 HIST1H1DP16402 221 aaKnown RBP18.15■□□□□ 0.5
SHMT1-203ENST00000354098 RCC1P18754 421 aaPredicted RBP18.15■□□□□ 0.5
SHMT1-203ENST00000354098 OMGP23515 440 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 ZNF782Q6ZMW2 699 aaPredicted RBP18.15■□□□□ 0.5
SHMT1-203ENST00000354098 Q6ZPA2 131 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 AP3S1Q92572 193 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 TNFRSF14Q92956 283 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 LHX4Q969G2 390 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 TAS2R3Q9NYW6 316 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 TRAPPC2LQ9UL33 140 aa18.15■□□□□ 0.5
SHMT1-203ENST00000354098 KIAA2026Q5HYC2 2103 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 TRAV40A0A0B4J280 105 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 ZNF701M0R085 212 aaPredicted RBP18.14■□□□□ 0.49
SHMT1-203ENST00000354098 HPGDSO60760 199 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 FSHBP01225 129 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 EIF4EP06730 217 aaKnown RBP18.14■□□□□ 0.49
SHMT1-203ENST00000354098 HNF1AP20823 631 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 PRTN3P24158 256 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 SSTR5P35346 364 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 KLRD1Q13241 179 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 DYNC1I2Q13409 638 aaKnown RBP18.14■□□□□ 0.49
SHMT1-203ENST00000354098 CDNFQ49AH0 187 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 C5orf24Q7Z6I8 188 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 NANPQ8TBE9 248 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 CCDC59Q9P031 241 aaKnown RBP18.14■□□□□ 0.49
SHMT1-203ENST00000354098 CDC42EP3Q9UKI2 254 aa18.14■□□□□ 0.49
SHMT1-203ENST00000354098 CENPVL3A0A0U1RRI6 287 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 NAPSAO96009 420 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 IGHV1-8P0DP01 117 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 CDK2P24941 298 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 GDNFP39905 211 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 PRAMEF5Q5TYX0 476 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 BAIAP2L2Q6UXY1 529 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms