RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 IGHV2-5P01817 119 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 PRSS1P07477 247 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 FOXL1Q12952 345 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SMIM21Q3B7S5 101 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR2AK2Q8NG84 335 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR4F5Q8NH21 305 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR4F4Q96R69 305 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 A4D1N5 150 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF593O00488 134 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ICOSLGO75144 302 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 HIST1H1CP16403 213 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 DUSP8Q13202 625 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ARRDC2Q8TBH0 407 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 FAM173AQ9BQD7 235 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 LOC101059948A0A1B0GTJ6 334 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SRSF6Q13247 344 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CCDC71LQ8N9Z2 235 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CD200R1Q8TD46 325 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR4C46A6NHA9 309 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 EMC8O43402 210 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR1D4P47884 311 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF776Q68DI1 518 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ZFAND6Q6FIF0 208 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TMPRSS12Q86WS5 348 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 DND1Q8IYX4 353 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 NUDCD2Q8WVJ2 157 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 DTD2Q96FN9 168 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MESP1Q9BRJ9 268 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ATP23Q9Y6H3 246 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 GNG7O60262 68 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 NPBWR1P48145 328 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 HLA-DQA1Q5Y7H0 255 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 LYG2Q86SG7 212 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 GATAD1Q8WUU5 269 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MOB3AQ96BX8 217 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 NAA11Q9BSU3 229 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 G6PC2Q9NQR9 355 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 C7orf71A4D174 169 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CLDN34H7C241 214 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR7C1O76099 320 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 FABP5Q01469 135 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 KLF9Q13886 244 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CISD2Q8N5K1 135 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 C4orf36Q96KX1 117 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 UQCR10Q9UDW1 63 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 NDUFC2O95298 119 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CPEB3Q8NE35 698 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR1S2Q8NGQ3 325 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ALG14Q96F25 216 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CNN2Q99439 309 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM150CB9EJG8 249 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 GABRPO00591 440 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MBTPS2O43462 519 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 DPTQ07507 201 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 DLX2Q07687 328 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 FAM78BQ5VT40 261 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 NEIL1Q96FI4 390 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SUSD3Q96L08 255 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 LINC01549A6NIU2 74 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 PAX1P15863 534 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 P2RY4P51582 365 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TAS2R20P59543 309 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TNFRSF9Q07011 255 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 DCAF12L2Q5VW00 463 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SLC24A5Q71RS6 500 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SLC36A1Q7Z2H8 476 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR4B1Q8NGF8 309 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF823P16415 610 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SOCS4Q8WXH5 440 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ZFP30Q9Y2G7 519 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CCL20P78556 96 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MBOAT2Q6ZWT7 520 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 WDR5BQ86VZ2 330 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR51I2Q9H344 312 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 DNAJC4Q9NNZ3 241 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 LTBP3Q9NS15 1303 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SCDO00767 359 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 PTGFRP43088 359 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 EOGTQ5NDL2 527 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OGFOD3Q6PK18 319 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 C20orf85Q9H1P6 137 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 A8MWP6 167 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ST8SIA3O43173 380 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF660Q6AZW8 331 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 WDR31Q8NA23 367 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR5AU1Q8NGC0 362 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CCL4L1Q8NHW4 92 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SMIM17P0DL12 118 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 GLYATL3Q5SZD4 288 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 FAM71F2Q6NXP2 309 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 RNASEKQ6P5S7 137 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 FIGLAQ6QHK4 219 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM182Q6ZP80 229 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 HBQ1P09105 142 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ATF1P18846 271 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 HSD11B1LQ7Z5J1 315 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MOGAT3Q86VF5 341 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 BMPERQ8N8U9 685 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SGPP1Q9BX95 441 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms